Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq15132 154 2e-32
seq40134 107 3e-18
>seq15132
Length=16380
Score = 154 bits (170), Expect = 2e-32
Identities = 214/300 (71%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || || || ||||| || ||||| ||| || ||||| ||| | || || |
Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | ||||| || || || | || |||||||||||||| ||||||||| | ||||
Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||| || | || |||| || || |||| ||| ||||| || || | ||| | |||
Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||||||||| || ||||| ||||| || | | ||| | ||| || || |
Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 11534
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| || | || ||||| || |||||| ||| || || || || || || ||| |||
Sbjct 11535 TCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTGCAA 11594
Score = 143 bits (158), Expect = 4e-29
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || | ||| ||||| || | |||||| ||| ||| || || || || ||||||||
Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
| || ||||||| ||||||||||||||||||||| || || |||||||| || || ||
Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| ||||||||||| || | ||| || | ||| |||| | || || | | || |
Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|| | ||| | |||| || || || || || || ||||||||||| || ||||| | |
Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493
Query 9967 TG 9968
||
Sbjct 13494 TG 13495
Score = 87.8 bits (96), Expect = 3e-12
Identities = 95/124 (77%), Gaps = 4/124 (3%)
Strand=Plus/Plus
Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGG 9625
|||||| ||||||| || ||||| || ||||| |||||||||||||||||||| | ||
Sbjct 12153 TGCCAGTGGTAGAGAGTGTTGAATTCAGCCGCAATTCGGTTCTGGTACTGAAATCGCTGG 12212
Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685
| |||||| | ||| || ||||| | || | ||| ||||| ||||| | || || |
Sbjct 12213 T--TGAACAGCAGCTCGGGATCAAACTTGAGTTTGAACTGGTAGCCGCTTAAGTGTTGCA 12270
Query 9686 CATA 9689
||||
Sbjct 12271 CATA 12274
>seq40134
Length=18165
Score = 107 bits (118), Expect = 3e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| ||| ||||||| ||||||| |||||||| |||| || || ||| ||
Sbjct 5840 TCAGGCATCAGCCCATGCCAGTGGTAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 5781
Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672
||||| || || || ||||| | ||| ||||| || | |||| | || |||||||
Sbjct 5780 TACTGGAACTGCGTCCCAAACAGCAGCTCGGGGTCGAACTTGAGCTTCAGGTAGTACCCG 5721
Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
||||| ||||||||||| | | || | ||| |||||||| |||||
Sbjct 5720 CTGAGGTGCTGGACATAGTCTTCAATGACAATCTTAATGGTCTCCCC 5674
Score = 107 bits (118), Expect = 3e-18
Identities = 190/277 (69%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961
|||||| ||| || | ||| || || | ||| || || || || || || ||
Sbjct 7402 CTTCACGTTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCAAAGCCAGT 7343
Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021
|| |||||||| || ||||||||||||||| | || ||||||||| ||| | | ||
Sbjct 7342 TTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAG 7283
Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081
||| |||| |||||| ||||| || | ||| | ||||| || || || || | |||
Sbjct 7282 CCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGCTTTCCCCAAAAATACCGTTGGG 7223
Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
| ||||| || | | ||||| | |||| || | ||| || | ||| ||||| ||
Sbjct 7222 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCAGAGCATCAATGTCTCCATACAG 7163
Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||||| ||| || || |||| | ||| ||| ||
Sbjct 7162 CTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 7126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723164785823800
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