Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq15132 154 2e-32 seq40134 107 3e-18 >seq15132 Length=16380 Score = 154 bits (170), Expect = 2e-32 Identities = 214/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || || || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | ||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || | || |||| || || |||| ||| ||||| || || | ||| | ||| Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || ||||| ||||| || | | ||| | ||| || || | Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 11534 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | || ||||| || |||||| ||| || || || || || || ||| ||| Sbjct 11535 TCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTGCAA 11594 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| || | |||||| ||| ||| || || || || |||||||| Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||||||||||||||| || || |||||||| || || || Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| |||| | || || | | || | Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493 Query 9967 TG 9968 || Sbjct 13494 TG 13495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGG 9625 |||||| ||||||| || ||||| || ||||| |||||||||||||||||||| | || Sbjct 12153 TGCCAGTGGTAGAGAGTGTTGAATTCAGCCGCAATTCGGTTCTGGTACTGAAATCGCTGG 12212 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | |||||| | ||| || ||||| | || | ||| ||||| ||||| | || || | Sbjct 12213 T--TGAACAGCAGCTCGGGATCAAACTTGAGTTTGAACTGGTAGCCGCTTAAGTGTTGCA 12270 Query 9686 CATA 9689 |||| Sbjct 12271 CATA 12274 >seq40134 Length=18165 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| ||||||| ||||||| |||||||| |||| || || ||| || Sbjct 5840 TCAGGCATCAGCCCATGCCAGTGGTAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 5781 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || || || ||||| | ||| ||||| || | |||| | || ||||||| Sbjct 5780 TACTGGAACTGCGTCCCAAACAGCAGCTCGGGGTCGAACTTGAGCTTCAGGTAGTACCCG 5721 Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| ||||||||||| | | || | ||| |||||||| ||||| Sbjct 5720 CTGAGGTGCTGGACATAGTCTTCAATGACAATCTTAATGGTCTCCCC 5674 Score = 107 bits (118), Expect = 3e-18 Identities = 190/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||| ||| || | ||| || || | ||| || || || || || || || Sbjct 7402 CTTCACGTTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCAAAGCCAGT 7343 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 || |||||||| || ||||||||||||||| | || ||||||||| ||| | | || Sbjct 7342 TTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAG 7283 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||| ||||| || | ||| | ||||| || || || || | ||| Sbjct 7282 CCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGCTTTCCCCAAAAATACCGTTGGG 7223 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| | |||| || | ||| || | ||| ||||| || Sbjct 7222 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCAGAGCATCAATGTCTCCATACAG 7163 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| ||| || || |||| | ||| ||| || Sbjct 7162 CTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 7126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723164785823800