Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq35167 93.3 5e-14 seq1410 89.7 6e-13 seq37302 87.8 2e-12 >seq35167 Length=21438 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 || ||||| || |||||||| ||||| | ||||| || || || |||||||| |||| Sbjct 16658 TTCCCACGAAGGGGAAATACTCCATACTTGTCTCTCCCAACCACTCCGAGACCAGAGACA 16717 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA 168533 || || ||||| ||||| || ||||| |||| |||||||||||| Sbjct 16718 GCCAGTGTTTTGGCTGAGTCCCCCTCGGTCAGGATGAGTGTACA 16761 >seq1410 Length=9541 Score = 89.7 bits (98), Expect = 6e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136719 GCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1 GCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 57 >seq37302 Length=213014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG 136774 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||| Sbjct 105235 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACACCAAGGTCGCGGGTTCGATCCCCG 105178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588517651514600