Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq40441 129 1e-24 seq27582 127 5e-24 >seq40441 Length=3214 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 818 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 759 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || || || |||||||| ||||| || Sbjct 758 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGG 699 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||||||||| | || ||||| ||||| | ||||| Sbjct 698 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTCTTG 639 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 638 CCAGTCAGGGTCTTCACAAAGATCTGCAT 610 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || | || || | |||||||| Sbjct 590 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 531 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || || ||||||||||| ||||| || Sbjct 530 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 471 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || ||||| || | ||| Sbjct 470 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATGGTC 414 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 413 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382 Score = 116 bits (128), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| || | || || | |||||||| Sbjct 362 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 303 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || || ||||||||||| ||||| || Sbjct 302 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 243 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || ||||| || | ||| Sbjct 242 ATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATGGTC 186 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || || || | ||||||| Sbjct 185 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 152 >seq27582 Length=3938 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| |||| ||||| | |||||||| Sbjct 2356 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 2415 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 2416 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 2475 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| || || || ||||| | ||| Sbjct 2476 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 2532 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2533 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2564 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || |||||||| || |||||||| || || || ||||| |||| || || Sbjct 2571 TCTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 2630 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || || || ||||||||||| Sbjct 2631 ACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCC 2690 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || ||||| |||||||| ||| || ||||| Sbjct 2691 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTC 2747 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 2748 CAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2792 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | ||| || |||||||| || ||||| ||||| |||| ||||| Sbjct 3027 TCTGAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 3086 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || ||||| || | || || || ||||||||||| Sbjct 3087 GCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCC 3146 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || ||||| |||||||| ||| || ||||| Sbjct 3147 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTC 3203 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 3204 CAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| ||||| | || ||||| Sbjct 2812 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 2871 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 2872 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 2931 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 2932 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 2988 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2989 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020 Score = 122 bits (134), Expect = 2e-22 Identities = 165/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | || || | ||| || |||||||| || || || |||||||||| |||| | Sbjct 3483 TCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAG-G 3541 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | || ||||| |||||||| || || ||||| || | || || || |||||||||| Sbjct 3542 TGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGC 3601 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTT 195094 |||| ||||| || || || ||| || |||||||||||||| ||| || || | Sbjct 3602 CTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCT 3658 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| | ||||| || |||| || || || || | ||||| Sbjct 3659 CGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3704 Score = 118 bits (130), Expect = 2e-21 Identities = 164/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | || || | ||| || |||||||| || || || |||||||||| |||| | Sbjct 3255 TCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAG-G 3313 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | || ||||| |||||||| || || ||||| || | || || || |||||||||| Sbjct 3314 TGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGC 3373 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTT 195094 |||| ||||| || || || ||| || ||||| |||||||| ||| || |||| Sbjct 3374 CTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTT 3430 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | ||||| || |||| || || || || | ||||| Sbjct 3431 CCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108596602239119