Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 109 4e-19
seq40441 93.3 3e-14
>seq27582
Length=3938
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||| || || || || || ||||||||||
Sbjct 3250 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3309
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || |||| ||||| || ||||| |||| | ||| |||||||| |||
Sbjct 3310 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3369
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || || || || || ||| | || | |||||| | || |||
Sbjct 3370 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3429
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||||| || ||||| || | || || ||||| |||||||||
Sbjct 3430 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3477
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || | || ||||| || || || || || ||||| ||||
Sbjct 2566 CCACCTCTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2625
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| || ||||| |||| | ||| ||||| || |||
Sbjct 2626 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 2685
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || || || || || ||| | || | |||||| | || |||
Sbjct 2686 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 2745
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||||| || ||||| || | || || ||||| |||||||||
Sbjct 2746 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2793
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || || || || || || || || ||||| ||||
Sbjct 3022 CCACCTCTGAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 3081
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | || |||| ||||| || ||||| |||| | ||| ||||| || |||
Sbjct 3082 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 3141
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || || || || || ||| | || | |||||| | || |||
Sbjct 3142 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3201
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||||| || ||||| || | || || ||||| |||||||||
Sbjct 3202 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3249
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||| || || || || || ||||||||||
Sbjct 3478 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3537
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || |||| ||||| || ||||| |||| | ||| |||||||| |||
Sbjct 3538 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3597
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || || || || || ||| | || | |||||| | || ||
Sbjct 3598 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3657
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| || ||||| || | || || ||||| |||||||||
Sbjct 3658 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3705
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || || ||||| |||| | ||| | |||| |||| |||
Sbjct 2362 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGC 2421
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||| | ||| |||||||| ||||||||||| || || || || ||
Sbjct 2422 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 2481
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | || || || || |||| || ||||| ||
Sbjct 2482 GCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 2541
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || ||||| |||||||||
Sbjct 2542 AGGGTCTTCACAAAGATCTGCATG 2565
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || || || || | || | ||| ||||| || || || || || ||||| ||||
Sbjct 2794 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2853
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | || |||| ||||| || ||||| |||| | ||| |||||||| |||
Sbjct 2854 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 2913
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || || || || || ||| | || | |||||| | || ||
Sbjct 2914 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 2973
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| || ||||| || | || || ||||| |||||||||
Sbjct 2974 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3021
>seq40441
Length=3214
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| || || || || || ||||| || | | || | |||| |||| |||
Sbjct 584 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGC 525
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| | ||| |||||||| ||||||||||| || || || || ||
Sbjct 524 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 465
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | || || ||||| |||| || ||||| ||
Sbjct 464 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTC 405
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || ||||| |||||||||
Sbjct 404 AGGGTCTTCACAAAGATCTGCATG 381
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || || || || ||||| || | | || | |||| |||| ||
Sbjct 357 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTG 298
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || |||| | ||| |||||||| ||||||||||| || || || || ||
Sbjct 297 CTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 238
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | |||||| | || || ||||| |||| || ||||| ||
Sbjct 237 AGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGT 178
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 177 CAGGGTCTTCACAAAGATCTGCAT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395977720915749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |