Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 109 1e-18
seq43461 89.7 1e-12
seq35559 89.7 1e-12
>seq1566
Length=12574
Score = 109 bits (120), Expect = 1e-18
Identities = 124/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| ||| || ||||| || ||||||||| ||||| ||||||||||| |||
Sbjct 2905 GTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTGG 2964
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| ||||| | ||| || |||||||||| ||||||||| | |||||||| |||
Sbjct 2965 -TTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTG 3023
Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | || | |||||| | | |||||| |||||||
Sbjct 3024 CGACTCAATGATAGCGTACCAGAGCTGCTGGGCCTTCACCACCC 3067
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || || | ||| || || ||| || || |||| | | |
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| ||| |||| ||| || || || ||||| |||||||||||| |||||||||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| ||| ||||| ||||| || || ||||
Sbjct 4943 TCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973
Score = 84.2 bits (92), Expect = 4e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|||||||| || || ||||| || | ||| || || |||||||||||||| ||
Sbjct 387 CCTTTGCTGACAGGAGAGCCCTCATACGTCTCGTACGGTCCCTGCTCCTTGGCCAGTTCA 446
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| || | ||||||| | ||||| || || || || |||| | ||| | || |
Sbjct 447 CAGCTGGCTTCCAGGGCACCATAGTAAATAGTCTCGAAGATCTGCTGGTTCAAGCGCTGG 506
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
||||| || | |||||| | |||| | ||| |||| ||||| ||||| ||
Sbjct 507 GCCTCGGGACTCTCGAAGGGGTACCTCATCAGGATGAAAGCATCCGCCAGGCCCTGCACG 566
Query 213321 CCGATGCCGATGGG 213334
||||||||||||||
Sbjct 567 CCGATGCCGATGGG 580
>seq43461
Length=23750
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974
|| |||||| || |||||||| ||||| | | ||| | ||| ||||||||||| ||
Sbjct 23141 TACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAAT 23200
Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034
| ||||||||| ||||| ||||| || || || || |||||||||| || |||||
Sbjct 23201 GGACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAG 23260
Query 213035 ACTGTTCCTCACTCCGT 213051
||||| || | ||||
Sbjct 23261 GCTGTTTCTGAGGCCGT 23277
Score = 89.7 bits (98), Expect = 1e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 212920 GGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCT 212979
|||| || |||||||| ||||| | | ||| | ||| ||||||||||| ||| ||
Sbjct 23296 GGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACT 23355
Query 212980 CGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGT 213039
||||||| ||||| ||||| || || || || |||||||||| || ||||| ||||
Sbjct 23356 CGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGT 23415
Query 213040 TCCTCACTCCGT 213051
| || || ||||
Sbjct 23416 TTCTGACGCCGT 23427
>seq35559
Length=19442
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || | ||||||||| | || || || ||| |||||||| | || || | ||
Sbjct 2943 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 2884
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
||||| ||||||| || |||||||||||||||||||| || |||||||| || |||||
Sbjct 2883 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACGC 2825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930807869530880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |