Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1566 109 1e-18 seq43461 89.7 1e-12 seq35559 89.7 1e-12 >seq1566 Length=12574 Score = 109 bits (120), Expect = 1e-18 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||| || ||||| || ||||||||| ||||| ||||||||||| ||| Sbjct 2905 GTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTGG 2964 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| || |||||||||| ||||||||| | |||||||| ||| Sbjct 2965 -TTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTG 3023 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 3024 CGACTCAATGATAGCGTACCAGAGCTGCTGGGCCTTCACCACCC 3067 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || || || | ||| || || ||| || || |||| | | | Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || || || ||||| |||||||||||| ||||||||| Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| ||| ||||| ||||| || || |||| Sbjct 4943 TCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || ||||| || | ||| || || |||||||||||||| || Sbjct 387 CCTTTGCTGACAGGAGAGCCCTCATACGTCTCGTACGGTCCCTGCTCCTTGGCCAGTTCA 446 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | ||||||| | ||||| || || || || |||| | ||| | || | Sbjct 447 CAGCTGGCTTCCAGGGCACCATAGTAAATAGTCTCGAAGATCTGCTGGTTCAAGCGCTGG 506 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| || | |||||| | |||| | ||| |||| ||||| ||||| || Sbjct 507 GCCTCGGGACTCTCGAAGGGGTACCTCATCAGGATGAAAGCATCCGCCAGGCCCTGCACG 566 Query 213321 CCGATGCCGATGGG 213334 |||||||||||||| Sbjct 567 CCGATGCCGATGGG 580 >seq43461 Length=23750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || |||||||| ||||| | | ||| | ||| ||||||||||| || Sbjct 23141 TACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAAT 23200 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| ||||| ||||| || || || || |||||||||| || ||||| Sbjct 23201 GGACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAG 23260 Query 213035 ACTGTTCCTCACTCCGT 213051 ||||| || | |||| Sbjct 23261 GCTGTTTCTGAGGCCGT 23277 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 212920 GGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCT 212979 |||| || |||||||| ||||| | | ||| | ||| ||||||||||| ||| || Sbjct 23296 GGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACT 23355 Query 212980 CGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGT 213039 ||||||| ||||| ||||| || || || || |||||||||| || ||||| |||| Sbjct 23356 CGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGT 23415 Query 213040 TCCTCACTCCGT 213051 | || || |||| Sbjct 23416 TTCTGACGCCGT 23427 >seq35559 Length=19442 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||||||||| | || || || ||| |||||||| | || || | || Sbjct 2943 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 2884 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| ||||||| || |||||||||||||||||||| || |||||||| || ||||| Sbjct 2883 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACGC 2825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930807869530880