Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1566 107 4e-18 seq41089 87.8 3e-12 seq43461 84.2 4e-11 >seq1566 Length=12574 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||||||||| || || ||||| || || |||||||| Sbjct 4810 CTGGTTGGTTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATC 4869 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||||||| || |||| ||| | || || | ||||||||| ||||| Sbjct 4870 TCTGGCTCGCTGCTCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTC 4929 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| || | ||| | || ||||||| || Sbjct 4930 CAGATGCCACGGCTCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| | ||| || || || || |||||||| || |||| Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 ||||||||| | || || |||||| ||| | ||||||||||| ||| |||| Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007 Query 221850 CGCCAGTCTCC 221860 ||| |||||| Sbjct 3008 TGCCGGTCTCC 3018 >seq41089 Length=22409 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| || || ||||||||||| ||||| ||||| || || || | Sbjct 10803 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTTTTTTCGGGTTCCTTTGCTGCTATATTTT 10862 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| ||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 10863 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAGA 10921 Query 26002 GACGAGG 26008 || |||| Sbjct 10922 GATGAGG 10928 >seq43461 Length=23750 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| ||||| ||||| | | ||| | ||| ||| | || || ||| Sbjct 23142 ACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATG 23201 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| ||||| || || |||||||| | || || || Sbjct 23202 GACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGG 23261 Query 221243 CTGTTGCGCAGTCCGAATCTA 221263 ||||| | || ||| ||||| Sbjct 23262 CTGTTTCTGAGGCCGTATCTA 23282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928121961366080