Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 107 4e-18
seq41089 87.8 3e-12
seq43461 84.2 4e-11
>seq1566
Length=12574
Score = 107 bits (118), Expect = 4e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078
|| |||| || || |||| ||||||||| || || ||||| || || ||||||||
Sbjct 4810 CTGGTTGGTTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATC 4869
Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138
||||| |||||||||||| || |||| ||| | || || | ||||||||| |||||
Sbjct 4870 TCTGGCTCGCTGCTCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTC 4929
Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
|||||||||||||| || | ||| | || ||||||| ||
Sbjct 4930 CAGATGCCACGGCTCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973
Score = 87.8 bits (96), Expect = 3e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789
||||||| |||||| |||| |||| | ||| || || || || |||||||| || ||||
Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947
Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849
||||||||| | || || |||||| ||| | ||||||||||| ||| ||||
Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007
Query 221850 CGCCAGTCTCC 221860
||| ||||||
Sbjct 3008 TGCCGGTCTCC 3018
>seq41089
Length=22409
Score = 87.8 bits (96), Expect = 3e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||||||||| || || ||||||||||| ||||| ||||| || || || |
Sbjct 10803 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTTTTTTCGGGTTCCTTTGCTGCTATATTTT 10862
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001
|||| ||| ||| ||| ||||| || ||| ||||| ||||| || || || |||||
Sbjct 10863 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAGA 10921
Query 26002 GACGAGG 26008
|| ||||
Sbjct 10922 GATGAGG 10928
>seq43461
Length=23750
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182
|| ||||| ||||| ||||| ||||| | | ||| | ||| ||| | || || |||
Sbjct 23142 ACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATG 23201
Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242
||||||||||||||||||||| ||||| || || |||||||| | || || ||
Sbjct 23202 GACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGG 23261
Query 221243 CTGTTGCGCAGTCCGAATCTA 221263
||||| | || ||| |||||
Sbjct 23262 CTGTTTCTGAGGCCGTATCTA 23282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928121961366080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |