Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq35559 86.0 7e-12 seq1566 82.4 9e-11 >seq35559 Length=19442 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||| ||||||||||| || || || ||||||||||||||||||| Sbjct 4118 AGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACCAACTTCTTTGAGA 4177 Query 65501 AGCGAGTTGGGGACTAT 65517 ||||||| || || ||| Sbjct 4178 AGCGAGTAGGTGAATAT 4194 >seq1566 Length=12574 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | ||||| | | || ||||||||||| || ||||| || ||| | |||||||| Sbjct 3044 TGGTACGCTATCATTGAGTCGCAGACGGAGACCGGCACACCCTACATGGTCTACAAGGAC 2985 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | || ||| ||||| ||||| |||| |||| || || || || ||||| ||| Sbjct 2984 TCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGGACCATTAAATGCAGCAATCTATGC 2925 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || ||||| | |||||||| ||||||||| Sbjct 2924 ACTGAAATCGTGGAGTACACCAGCAAGGATGAG 2892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596105342080160