Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq44041 161 1e-33
seq23084 161 1e-33
seq17080 149 8e-30
seq15882 143 3e-28
seq31604 120 4e-21
seq1566 89.7 6e-12
seq43461 86.0 8e-11
>seq44041
Length=1029
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 304 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 363
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 364 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 423
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || || |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct 424 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 483
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 484 GCACCTGCTTCAGCACCTTGTA 505
>seq23084
Length=6925
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 6194 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 6253
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 6254 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 6313
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || || |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct 6314 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 6373
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 6374 GCACCTGCTTCAGCACCTTGTA 6395
>seq17080
Length=6372
Score = 149 bits (164), Expect = 8e-30
Identities = 147/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 1254355 CGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCT 1254414
|| |||| ||| ||| |||||||| ||||||||||| |||| ||| ||| |||||
Sbjct 1738 CGACGCGGATGCGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCT 1797
Query 1254415 TGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1254474
|||| |||||||||| || |||||| | ||||||| |||| |||||||| || |
Sbjct 1798 TGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGA 1857
Query 1254475 ACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1254534
| |||||||||| ||| | ||| ||||||||| |||||||||||||||||| |
Sbjct 1858 AGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCA 1917
Query 1254535 GCACCTTGTA 1254544
||||||||||
Sbjct 1918 GCACCTTGTA 1927
>seq15882
Length=6559
Score = 143 bits (158), Expect = 3e-28
Identities = 138/177 (78%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427
||| |||||||| ||||||||||| |||| ||| ||| ||||||||| |||||||
Sbjct 4717 CAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGC 4658
Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487
||| || |||||| | ||||||| || | |||||||| ||||| ||||||||||
Sbjct 4657 CAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTCACAAAGGAGTTCATGAT 4598
Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
||| | ||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct 4597 GCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 4541
>seq31604
Length=29591
Score = 120 bits (132), Expect = 4e-21
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | ||||||||| || ||||| ||||| || | | ||
Sbjct 16289 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGA 16230
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || ||||| ||| ||| || |||| || || | |
Sbjct 16229 TGGTGGAGCGCTTGTTATAATGGGCCAGGCGGGAGGCTTCTCCAGCGATACGTTCAAAGA 16170
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| |||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 16169 TGTCGTTGACAAAGGAGTTCATGATACCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGT 16110
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| || ||||| || ||||||||||
Sbjct 16109 GGACTTGCTTCAGTACCTTGTAGA 16086
>seq1566
Length=12574
Score = 89.7 bits (98), Expect = 6e-12
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||||| || ||||| || ||| | | | || |||||||||||||||||| | |
Sbjct 2914 ACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTGGTTGCTCTTG 2973
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
||||| || |||||||| || ||||||||| | ||||||||| |||||| | | | |
Sbjct 2974 CGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTGCGACTCAATG 3033
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
|| || |||||| ||| | || ||| || | ||| ||||||||
Sbjct 3034 ATAGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCATGCGGCCCT 3082
>seq43461
Length=23750
Score = 86.0 bits (94), Expect = 8e-11
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407
|| || || ||||| || | |||||||||||||||| ||||| | ||| | ||||
Sbjct 23148 AACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTCG 23207
Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTG 1627467
|||||||||||||||| | ||||| || || |||||| | | || |||||| |||
Sbjct 23208 TTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGTTT 23267
Query 1627468 CGCAGGCCGT 1627477
| |||||||
Sbjct 23268 CTGAGGCCGT 23277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102030099030469
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |