Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq44041 161 1e-33 seq23084 161 1e-33 seq17080 149 8e-30 seq15882 143 3e-28 seq31604 120 4e-21 seq1566 89.7 6e-12 seq43461 86.0 8e-11 >seq44041 Length=1029 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 304 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 363 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 364 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 423 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 424 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 483 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 484 GCACCTGCTTCAGCACCTTGTA 505 >seq23084 Length=6925 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 6194 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 6253 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 6254 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 6313 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 6314 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 6373 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 6374 GCACCTGCTTCAGCACCTTGTA 6395 >seq17080 Length=6372 Score = 149 bits (164), Expect = 8e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1254355 CGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCT 1254414 || |||| ||| ||| |||||||| ||||||||||| |||| ||| ||| ||||| Sbjct 1738 CGACGCGGATGCGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCT 1797 Query 1254415 TGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1254474 |||| |||||||||| || |||||| | ||||||| |||| |||||||| || | Sbjct 1798 TGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGA 1857 Query 1254475 ACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1254534 | |||||||||| ||| | ||| ||||||||| |||||||||||||||||| | Sbjct 1858 AGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCA 1917 Query 1254535 GCACCTTGTA 1254544 |||||||||| Sbjct 1918 GCACCTTGTA 1927 >seq15882 Length=6559 Score = 143 bits (158), Expect = 3e-28 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| |||||||| ||||||||||| |||| ||| ||| ||||||||| ||||||| Sbjct 4717 CAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGC 4658 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || |||||| | ||||||| || | |||||||| ||||| |||||||||| Sbjct 4657 CAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTCACAAAGGAGTTCATGAT 4598 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 4597 GCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 4541 >seq31604 Length=29591 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || ||||| ||||| || | | || Sbjct 16289 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGA 16230 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || |||| || || | | Sbjct 16229 TGGTGGAGCGCTTGTTATAATGGGCCAGGCGGGAGGCTTCTCCAGCGATACGTTCAAAGA 16170 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 16169 TGTCGTTGACAAAGGAGTTCATGATACCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGT 16110 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | || ||||| || |||||||||| Sbjct 16109 GGACTTGCTTCAGTACCTTGTAGA 16086 >seq1566 Length=12574 Score = 89.7 bits (98), Expect = 6e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||| || ||||| || ||| | | | || |||||||||||||||||| | | Sbjct 2914 ACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTGGTTGCTCTTG 2973 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| || ||||||||| | ||||||||| |||||| | | | | Sbjct 2974 CGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTGCGACTCAATG 3033 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 || || |||||| ||| | || ||| || | ||| |||||||| Sbjct 3034 ATAGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCATGCGGCCCT 3082 >seq43461 Length=23750 Score = 86.0 bits (94), Expect = 8e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || || ||||| || | |||||||||||||||| ||||| | ||| | |||| Sbjct 23148 AACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTCG 23207 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTG 1627467 |||||||||||||||| | ||||| || || |||||| | | || |||||| ||| Sbjct 23208 TTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGTTT 23267 Query 1627468 CGCAGGCCGT 1627477 | ||||||| Sbjct 23268 CTGAGGCCGT 23277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102030099030469