Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq44041 228 1e-53
seq23084 219 7e-51
seq15882 187 4e-41
seq31604 183 5e-40
seq17080 156 7e-32
>seq44041
Length=1029
Score = 228 bits (252), Expect = 1e-53
Identities = 204/256 (80%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||
Sbjct 265 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 324
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| ||| ||||||||| |
Sbjct 325 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 384
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| |||||||| || || |||||||
Sbjct 385 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 444
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | |||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 445 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 504
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 505 ACACGTAGATCGAGTA 520
>seq23084
Length=6925
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| |||||||| |||||||| ||||| |||||||||||| ||||||| |||||| |||
Sbjct 6155 TGTATTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 6214
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| ||| ||||||||| |
Sbjct 6215 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 6274
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| |||||||| || || |||||||
Sbjct 6275 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 6334
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | |||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 6335 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6394
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 6395 ACACGTAGATCGAGTA 6410
>seq15882
Length=6559
Score = 187 bits (206), Expect = 4e-41
Identities = 187/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 1485483 GGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCAC 1485542
||||||||| ||||| |||||||||||| |||| || | ||| || | ||| |||||
Sbjct 4768 GGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTGCCCGGCCAGCAGCAGCCGCAC 4709
Query 1485543 GGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCC 1485602
||| ||||||||||| || | ||| ||| ||||||||| | ||||||||||
Sbjct 4708 GGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGA 4649
Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662
|||||| | ||||||| || | |||||||| ||||| ||||||||||| ||| |
Sbjct 4648 CGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTCACAAAGGAGTTCATGATGCCCATGGC 4589
Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGA 1485722
|||| ||||||||| |||||||||||||||||| ||||||||||| || || |||
Sbjct 4588 TTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGA 4529
Query 1485723 GTA 1485725
|||
Sbjct 4528 GTA 4526
Score = 91.5 bits (100), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||
Sbjct 4843 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4784
Query 1485530 TGATCAGGCGCAC 1485542
| ||| |||||
Sbjct 4783 GCAGCAGCCGCAC 4771
>seq31604
Length=29591
Score = 183 bits (202), Expect = 5e-40
Identities = 194/256 (76%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| |||||||||||||||||| ||||||| || || | |
Sbjct 16328 TGTACTTGGTGACAGCTTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 16269
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||||||| || ||||| ||||| |||| | ||| ||| ||||||||||
Sbjct 16268 GCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTATAAT 16209
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||||||| ||| || |||| || || | |||||||||||||| |||||||
Sbjct 16208 GGGCCAGGCGGGAGGCTTCTCCAGCGATACGTTCAAAGATGTCGTTGACAAAGGAGTTCA 16149
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||| ||||| || ||||| || |||||||
Sbjct 16148 TGATACCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGACTTGCTTCAGTACCTTGT 16089
Query 1485710 AAACAAAGGACGAGTA 1485725
| ||| || |||||
Sbjct 16088 AGACATAGATGGAGTA 16073
>seq17080
Length=6372
Score = 156 bits (172), Expect = 7e-32
Identities = 206/296 (70%), Gaps = 40/296 (14%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||
Sbjct 1647 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 1706
Query 1485530 T-------------------------------------GAT---CAGGCGCACGGCGGTC 1485549
||| ||| |||||||| |||
Sbjct 1707 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGCGGATGCGCAGCCGCACGGCCGTC 1766
Query 1485550 TGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCG 1485609
|||||||| || | ||| ||| ||||||||| | |||||||||| ||||||
Sbjct 1767 TGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCG 1826
Query 1485610 GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTG 1485669
| ||||||| |||| |||||||| || || ||||||||||| ||| | ||||
Sbjct 1827 CCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGAC 1886
Query 1485670 GAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725
||||||||| |||||||||||||||||| ||||||||||| || || ||||||
Sbjct 1887 GAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 1942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7909623838955823
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |