Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq44041 228 1e-53 seq23084 219 7e-51 seq15882 187 4e-41 seq31604 183 5e-40 seq17080 156 7e-32 >seq44041 Length=1029 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 265 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 324 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 325 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 384 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 385 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 444 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 445 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 504 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 505 ACACGTAGATCGAGTA 520 >seq23084 Length=6925 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 6155 TGTATTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 6214 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 6215 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 6274 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 6275 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 6334 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 6335 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6394 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 6395 ACACGTAGATCGAGTA 6410 >seq15882 Length=6559 Score = 187 bits (206), Expect = 4e-41 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485483 GGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCAC 1485542 ||||||||| ||||| |||||||||||| |||| || | ||| || | ||| ||||| Sbjct 4768 GGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTGCCCGGCCAGCAGCAGCCGCAC 4709 Query 1485543 GGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCC 1485602 ||| ||||||||||| || | ||| ||| ||||||||| | |||||||||| Sbjct 4708 GGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGA 4649 Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 |||||| | ||||||| || | |||||||| ||||| ||||||||||| ||| | Sbjct 4648 CGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTCACAAAGGAGTTCATGATGCCCATGGC 4589 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGA 1485722 |||| ||||||||| |||||||||||||||||| ||||||||||| || || ||| Sbjct 4588 TTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGA 4529 Query 1485723 GTA 1485725 ||| Sbjct 4528 GTA 4526 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4843 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4784 Query 1485530 TGATCAGGCGCAC 1485542 | ||| ||||| Sbjct 4783 GCAGCAGCCGCAC 4771 >seq31604 Length=29591 Score = 183 bits (202), Expect = 5e-40 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| |||||||||||||||||| ||||||| || || | | Sbjct 16328 TGTACTTGGTGACAGCTTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 16269 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| |||| | ||| ||| |||||||||| Sbjct 16268 GCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTATAAT 16209 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || |||| || || | |||||||||||||| ||||||| Sbjct 16208 GGGCCAGGCGGGAGGCTTCTCCAGCGATACGTTCAAAGATGTCGTTGACAAAGGAGTTCA 16149 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| || ||||| || ||||||| Sbjct 16148 TGATACCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGACTTGCTTCAGTACCTTGT 16089 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 16088 AGACATAGATGGAGTA 16073 >seq17080 Length=6372 Score = 156 bits (172), Expect = 7e-32 Identities = 206/296 (70%), Gaps = 40/296 (14%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 1647 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 1706 Query 1485530 T-------------------------------------GAT---CAGGCGCACGGCGGTC 1485549 ||| ||| |||||||| ||| Sbjct 1707 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGCGGATGCGCAGCCGCACGGCCGTC 1766 Query 1485550 TGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCG 1485609 |||||||| || | ||| ||| ||||||||| | |||||||||| |||||| Sbjct 1767 TGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCG 1826 Query 1485610 GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTG 1485669 | ||||||| |||| |||||||| || || ||||||||||| ||| | |||| Sbjct 1827 CCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGAC 1886 Query 1485670 GAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 ||||||||| |||||||||||||||||| ||||||||||| || || |||||| Sbjct 1887 GAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 1942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909623838955823