Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1410 113 6e-20 seq9064 104 3e-17 >seq1410 Length=9541 Score = 113 bits (124), Expect = 6e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709 ||||| | ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 285 TGCCTCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 344 Query 8710 TTCGATTCCCCGACGAGGAG 8729 |||||||||||||||||||| Sbjct 345 TTCGATTCCCCGACGAGGAG 364 Score = 107 bits (118), Expect = 3e-18 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 290 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 349 Query 11786 TTCCCCGACGAGGAGGGAG 11804 |||||||||||||||| || Sbjct 350 TTCCCCGACGAGGAGGCAG 368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||||||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 364 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 305 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 304 TACTAACGAGGA 293 >seq9064 Length=1566 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 591 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 532 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 531 CCCGACGGGGAG 520 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 591 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 532 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 531 CCCGACGGGGAGG 519 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 579 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 580 TACTAACGAGGA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652336748016080