Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq1410 113 6e-20
seq9064 104 3e-17
>seq1410
Length=9541
Score = 113 bits (124), Expect = 6e-20
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709
||||| | ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 285 TGCCTCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 344
Query 8710 TTCGATTCCCCGACGAGGAG 8729
||||||||||||||||||||
Sbjct 345 TTCGATTCCCCGACGAGGAG 364
Score = 107 bits (118), Expect = 3e-18
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 290 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 349
Query 11786 TTCCCCGACGAGGAGGGAG 11804
|||||||||||||||| ||
Sbjct 350 TTCCCCGACGAGGAGGCAG 368
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 364 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 305
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 304 TACTAACGAGGA 293
>seq9064
Length=1566
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 591 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 532
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 531 CCCGACGGGGAG 520
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 591 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 532
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 531 CCCGACGGGGAGG 519
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 579
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 580 TACTAACGAGGA 591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652336748016080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |