Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq27582 149 6e-31 seq40441 132 5e-26 seq1566 102 8e-17 >seq27582 Length=3938 Score = 149 bits (164), Expect = 6e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||||||| || ||| ||| || ||| Sbjct 3499 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGC 3558 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||| |||||||| |||||||||||||| |||| Sbjct 3559 TGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATC 3618 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| Sbjct 3619 TTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCA 3678 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 3679 GTCAGGGTCTTCACAAAGATCTGCATG 3705 Score = 145 bits (160), Expect = 7e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| ||| || ||||| Sbjct 2817 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTG 2876 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| |||||||| |||||||||||||| |||||| Sbjct 2877 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 2936 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || Sbjct 2937 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 2996 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 2997 CAGGGTCTTCACAAAGATCTGCATG 3021 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 2367 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAGCTGCTTGC 2425 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| |||||||| |||||||||||||| |||||| || Sbjct 2426 CAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2485 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 2486 TCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 2545 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2546 TCTTCACAAAGATCTGCATG 2565 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||||||| || ||| ||| || ||| Sbjct 3271 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGC 3330 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||| |||||||| |||||||||||||| |||| Sbjct 3331 TGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATC 3390 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | ||||| ||||||| || || | |||| || ||||| Sbjct 3391 TTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCA 3450 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 3451 GTCAGGGTCTTCACAAAGATCTGCATG 3477 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || ||| | || || |||||||||| Sbjct 2595 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCA-TCTTCCAGCTGCTTGC 2653 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || ||||| |||||||||||||| |||||| || Sbjct 2654 CAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2713 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || || | |||| || ||||| ||||| | Sbjct 2714 TCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGG 2773 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2774 TCTTCACAAAGATCTGCATG 2793 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||| || ||||||||||| Sbjct 3052 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCA 3111 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || ||||| |||||||||||||| |||||| ||| Sbjct 3112 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3171 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | |||| || ||||| ||||| || Sbjct 3172 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 3231 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3232 TTCACAAAGATCTGCATG 3249 >seq40441 Length=3214 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || || ||| | || || |||||||||| Sbjct 807 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCTGCTTGC 749 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| ||||| ||||||||||||||||| |||||| || Sbjct 748 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 689 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| | ||||| || || | ||||| ||| ||||| ||||| | Sbjct 688 TCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 629 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 628 TCTTCACAAAGATCTGCATG 609 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || || ||| | || || |||| Sbjct 357 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCT 299 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct 298 GCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 239 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || || | |||| ||| ||||| | Sbjct 238 TAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAG 179 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 178 TCAGGGTCTTCACAAAGATCTGCAT 154 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || || ||| | || || |||||||||| Sbjct 579 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCTGCTTGC 521 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| ||||| || |||||||||||||| |||||| || Sbjct 520 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 461 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 460 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGG 401 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 400 TCTTCACAAAGATCTGCATG 381 >seq1566 Length=12574 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | ||||||| ||||| || | ||| |||||||||||||| || || Sbjct 2892 CTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCC 2951 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||||| |||||| | ||||||||| | |||||| ||| ||| Sbjct 2952 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCC 3011 Query 148970 AGTTTCCACCTGCG 148983 || ||| ||||| Sbjct 3012 GGTCTCCGTCTGCG 3025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483044595890680