Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq27582 113 3e-20 seq40441 89.7 3e-13 >seq27582 Length=3938 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||||| || || ||| ||| || || |||||||||||||| Sbjct 3478 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3537 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 3538 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3597 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| |||| || | |||||| || | || || Sbjct 3598 ATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCACTGGGCTCAAC 3656 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || | ||||| || || || || | || || |||||||||||||| |||| Sbjct 3657 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT-GTTG 3708 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||||| || || ||| ||| || || |||||||| ||||| Sbjct 3022 CCACCTCTGAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 3081 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 3082 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 3141 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| || | |||||| || | || || Sbjct 3142 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCGATGGTGTCACTGGGCTCAAC 3200 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3201 TTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||||| || || ||| ||| || || |||||||||||||| Sbjct 3250 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3309 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 3310 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3369 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| |||| || | |||||| || | || || Sbjct 3370 ATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCACTGGGCTCAAC 3428 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3429 TTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | ||| | ||| || ||| ||| || || |||||||| ||||| Sbjct 2794 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2853 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 2854 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 2913 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 2914 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 2972 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 2973 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | || || ||| ||| || || |||||||| ||||| Sbjct 2338 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2397 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 2398 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 2457 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| || | |||||| || | || || Sbjct 2458 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCGATGGTGTCACTGGGCTCAAC 2516 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 2517 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2564 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||| | || || ||| ||| || || |||||||| ||||| Sbjct 2566 CCACCTCTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2625 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 2626 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 2685 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| || | |||||| || | || || Sbjct 2686 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCGATGGTGTCACTGGGCTCAAC 2744 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 2745 TTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2792 >seq40441 Length=3214 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 380 CCACCCCTCAGGCGCAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 321 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || || || |||| | ||||||||| | || Sbjct 320 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 261 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 260 ATGCCTTCCTTGTCCTGGATCTTAGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 202 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || || || || | || || |||||||||||||| Sbjct 201 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 154 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | || || ||| ||| || || |||||||| || || Sbjct 608 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 549 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || || || |||| | ||||||||| | || Sbjct 548 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 489 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 488 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 430 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || || || || | || || |||||||||||||| Sbjct 429 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328454593477440