Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq27582 96.9 8e-15 seq40441 87.8 4e-12 >seq27582 Length=3938 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || |||||| ||||||| || |||| Sbjct 3473 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAGTGAC 3414 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || || || Sbjct 3413 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 3354 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| ||||||| ||| | || ||| ||||||||||| || Sbjct 3353 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAACATC 3294 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 3293 CAGAAGGAGTCCACCCTGCAC 3273 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || || || |||| Sbjct 2561 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGTGAC 2502 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || || || Sbjct 2501 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 2442 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| ||||||||||| | ||| || |||| |||||| || Sbjct 2441 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATC 2382 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 2381 CAGAAGGAGTCCACCCTGCACCTTGT 2356 >seq40441 Length=3214 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| || ||||||| || || | ||||||||| Sbjct 590 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 531 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| |||| || ||| Sbjct 530 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGA 498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || || || || |||||||| || ||| Sbjct 466 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATCTTCGCTGGCAAG 525 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||| ||||| || |||||| Sbjct 526 CAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTTCAC 585 Query 206374 CTTGT 206378 ||||| Sbjct 586 CTTGT 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180878099587697