Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 96.9 8e-15
seq40441 87.8 4e-12
>seq27582
Length=3938
Score = 96.9 bits (106), Expect = 8e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || || || || |||||| ||||||| || ||||
Sbjct 3473 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAGTGAC 3414
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || ||||| ||| || || ||
Sbjct 3413 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 3354
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||| || || |||||| ||||||| ||| | || ||| ||||||||||| ||
Sbjct 3353 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAACATC 3294
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||| || || |||
Sbjct 3293 CAGAAGGAGTCCACCCTGCAC 3273
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || || || || ||||| | || || || ||||
Sbjct 2561 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGTGAC 2502
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || ||||| ||| || || ||
Sbjct 2501 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 2442
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||| || || |||||| ||||||||||| | ||| || |||| |||||| ||
Sbjct 2441 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATC 2382
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || ||||||||
Sbjct 2381 CAGAAGGAGTCCACCCTGCACCTTGT 2356
>seq40441
Length=3214
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||||||||| || ||||| ||||||| || ||||||| || || | |||||||||
Sbjct 590 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 531
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|||||||| || |||||||| |||| || |||
Sbjct 530 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGA 498
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||| ||| || || || || || |||||||| || |||
Sbjct 466 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATCTTCGCTGGCAAG 525
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | || || | || |||||| ||||||| ||||| || ||||||
Sbjct 526 CAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTTCAC 585
Query 206374 CTTGT 206378
|||||
Sbjct 586 CTTGT 590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180878099587697
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |