Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1566 96.9 3e-15 seq27582 91.5 1e-13 >seq1566 Length=12574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||||||| | ||| || ||||||||||| ||| |||| || ||||| | Sbjct 2906 TGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTGGT 2965 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 |||| || || ||||| | ||| ||| ||| |||||| ||| ||||||||| |||| Sbjct 2966 TGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTGCG 3025 Query 147623 TTTCAACGATA 147633 |||| |||| Sbjct 3026 ACTCAATGATA 3036 >seq27582 Length=3938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| |||||| ||||| || || | | Sbjct 2599 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCA 2658 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| |||||||| || || || || |||| Sbjct 2659 AAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACA 2718 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| ||||| | || | || || |||||||| || || Sbjct 2719 TTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTC 2778 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 2779 ACAAAGATCTGCATG 2793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || | ||| | | | ||||| || || |||||||||||| || || || Sbjct 2802 CAAGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCG 2861 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| ||||| || || | | |||| || | ||| ||||| ||||| |||||||| Sbjct 2862 TCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTC 2921 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || |||| | || | || || | ||||| || |||| || Sbjct 2922 CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGT 2981 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 2982 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || ||||||||||||||| || || || Sbjct 3034 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCG 3093 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| ||||| |||||||| || Sbjct 3094 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTG 3153 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | ||||| ||||| | || | Sbjct 3154 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATA 3213 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| || || | || ||||||||| Sbjct 3214 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || || || |||||| ||||| || || | | Sbjct 2371 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCA 2430 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| |||||||| || || || || |||| Sbjct 2431 AAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACA 2490 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || |||||||| || || Sbjct 2491 TTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 2550 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 2551 ACAAAGATCTGCATG 2565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476240295206520