Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq44041 185 1e-40
seq23084 185 1e-40
seq15882 167 3e-35
seq31604 134 2e-25
seq17080 134 2e-25
seq1566 95.1 2e-13
>seq44041
Length=1029
Score = 185 bits (204), Expect = 1e-40
Identities = 179/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 505 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 452
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || || |||||||| |||| ||||||| | |||||| |||
Sbjct 451 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 392
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 391 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 332
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 331 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 283
>seq23084
Length=6925
Score = 185 bits (204), Expect = 1e-40
Identities = 179/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 6395 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 6342
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || || |||||||| |||| ||||||| | |||||| |||
Sbjct 6341 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 6282
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 6281 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 6222
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 6221 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 6173
>seq15882
Length=6559
Score = 167 bits (184), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 4541 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 4594
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| ||||| |||||||| | || ||||||| | |||||| |||
Sbjct 4595 GGCATCATGAACTCCTTTGTGAACGACATCTTTGAGCGCATCGCCGGCGAGGCGTCGCGC 4654
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 4655 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4714
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | || ||| | || |||| |||||||||||||||||||||||
Sbjct 4715 CTGCTGCTGGCCGGGCAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 4763
>seq31604
Length=29591
Score = 134 bits (148), Expect = 2e-25
Identities = 178/244 (73%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | |||||||||| || ||||| || ||||| || ||| ||||
Sbjct 16073 TACTCCATCTATGTCTACAAGGTACTGAAGCAAGTCCACCCTGACAC---TGG--CATC- 16126
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| |||| ||||| ||||||||||| |||||||||||||| | || || ||||
Sbjct 16127 TCCTCCAAGGCCATGGGTATCATGAACTCCTTTGTCAACGACATCTTTGAACGTATCGCT 16186
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
|| ||| |||||||| | | ||||||||| ||| ||| | | || |||||
Sbjct 16187 GGAGAAGCCTCCCGCCTGGCCCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATT 16246
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| || ||||||||| | | | || || ||||||| |||||||||||| ||||||
Sbjct 16247 CAGACAGCTGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGC 16306
Query 725139 ACCA 725142
||||
Sbjct 16307 ACCA 16310
>seq17080
Length=6372
Score = 134 bits (148), Expect = 2e-25
Identities = 148/196 (76%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 1927 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 1874
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || || |||||||| |||| ||||||| | |||||| |||
Sbjct 1873 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1814
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 1813 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 1754
Query 725094 CTGATCATGCGCGGCG 725109
||| ||| |||| ||
Sbjct 1753 CTGCGCATCCGCGTCG 1738
Score = 95.1 bits (104), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127
|||| ||||||||||| |||||||| ||| | ||| |||||| ||||||| ||||||||
Sbjct 1739 CGCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 1680
Query 725128 TCTCCGAGGGCACCA 725142
|||||||||||||||
Sbjct 1679 TCTCCGAGGGCACCA 1665
>seq1566
Length=12574
Score = 95.1 bits (104), Expect = 2e-13
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| || || | | | | || | ||||||||||| |||||||||||||||
Sbjct 3050 CAGCTCTGGTACGCTATCATTGAGTCGCAGACGGAGACCGGCACACCCTACATGGTCTAC 2991
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210
|||||| || ||||| | |||||||||||||||||||| |||| | | |||
Sbjct 2990 AAGGACTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGGACCATTAAATGCAGCAAT 2931
Query 262211 CTGTGCACCGAGATCGT 262227
|| ||||| || |||||
Sbjct 2930 CTATGCACTGAAATCGT 2914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7171806397921634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |