Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq44041 185 1e-40 seq23084 185 1e-40 seq15882 167 3e-35 seq31604 134 2e-25 seq17080 134 2e-25 seq1566 95.1 2e-13 >seq44041 Length=1029 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 505 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 452 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 451 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 392 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 391 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 332 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 331 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 283 >seq23084 Length=6925 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 6395 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 6342 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 6341 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 6282 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 6281 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 6222 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 6221 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 6173 >seq15882 Length=6559 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 4541 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 4594 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| |||||||| | || ||||||| | |||||| ||| Sbjct 4595 GGCATCATGAACTCCTTTGTGAACGACATCTTTGAGCGCATCGCCGGCGAGGCGTCGCGC 4654 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 4655 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4714 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || ||| | || |||| ||||||||||||||||||||||| Sbjct 4715 CTGCTGCTGGCCGGGCAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 4763 >seq31604 Length=29591 Score = 134 bits (148), Expect = 2e-25 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||| || ||||| || ||||| || ||| |||| Sbjct 16073 TACTCCATCTATGTCTACAAGGTACTGAAGCAAGTCCACCCTGACAC---TGG--CATC- 16126 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| |||||||||||||| | || || |||| Sbjct 16127 TCCTCCAAGGCCATGGGTATCATGAACTCCTTTGTCAACGACATCTTTGAACGTATCGCT 16186 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | ||||||||| ||| ||| | | || ||||| Sbjct 16187 GGAGAAGCCTCCCGCCTGGCCCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATT 16246 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || ||||||||| | | | || || ||||||| |||||||||||| |||||| Sbjct 16247 CAGACAGCTGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGC 16306 Query 725139 ACCA 725142 |||| Sbjct 16307 ACCA 16310 >seq17080 Length=6372 Score = 134 bits (148), Expect = 2e-25 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 1927 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 1874 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 1873 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1814 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 1813 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 1754 Query 725094 CTGATCATGCGCGGCG 725109 ||| ||| |||| || Sbjct 1753 CTGCGCATCCGCGTCG 1738 Score = 95.1 bits (104), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| |||||||| ||| | ||| |||||| ||||||| |||||||| Sbjct 1739 CGCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 1680 Query 725128 TCTCCGAGGGCACCA 725142 ||||||||||||||| Sbjct 1679 TCTCCGAGGGCACCA 1665 >seq1566 Length=12574 Score = 95.1 bits (104), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| || || | | | | || | ||||||||||| ||||||||||||||| Sbjct 3050 CAGCTCTGGTACGCTATCATTGAGTCGCAGACGGAGACCGGCACACCCTACATGGTCTAC 2991 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 |||||| || ||||| | |||||||||||||||||||| |||| | | ||| Sbjct 2990 AAGGACTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGGACCATTAAATGCAGCAAT 2931 Query 262211 CTGTGCACCGAGATCGT 262227 || ||||| || ||||| Sbjct 2930 CTATGCACTGAAATCGT 2914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171806397921634