Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq27582 141 8e-29 seq40441 120 3e-22 >seq27582 Length=3938 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | || |||||| || ||||||||||||| |||||| || |||| Sbjct 3264 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3323 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| || |||||| || | ||||| || |||||||| Sbjct 3324 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3383 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | | ||||| || | || || |||| ||||| || Sbjct 3384 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3443 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || |||||||| |||||||| Sbjct 3444 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | || |||||| || ||||||||||||| |||||| || |||| Sbjct 3492 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3551 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| || |||||| || | ||||| || |||||||| Sbjct 3552 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3611 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | | ||||| || | || ||||| | ||||| || Sbjct 3612 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 3671 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || |||||||| |||||||| Sbjct 3672 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3704 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | ||| |||||| ||||||||||| |||| || || || |||| Sbjct 3036 CAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTC 3095 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| || |||||| || | ||||| || |||||||| Sbjct 3096 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 3155 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | | ||||| || | || || |||| ||||| || Sbjct 3156 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3215 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || |||||||| |||||||| Sbjct 3216 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 2601 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAA 2660 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | | Sbjct 2661 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2720 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| || ||||| Sbjct 2721 CTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCAC 2780 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2781 AAAGATCTGCAT 2792 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || |||| ||||||||||| || ||||| Sbjct 2829 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAA 2888 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | | Sbjct 2889 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2948 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 2949 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3008 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 3009 AAAGATCTGCAT 3020 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || ||||||||||| || ||||| Sbjct 2373 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 2432 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | | Sbjct 2433 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2492 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 2493 CTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2552 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2553 AAAGATCTGCAT 2564 >seq40441 Length=3214 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 345 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 286 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 285 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACATT 226 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | |||||| || || || |||| || ||||| Sbjct 225 CTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCAC 166 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 165 AAAGATCTGCATTTTG 150 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 573 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 514 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 513 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 454 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | |||||| || || || |||| || ||||| Sbjct 453 CTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCAC 394 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 393 AAAGATCTGCAT 382 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 801 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 742 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| ||||| | Sbjct 741 GATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 682 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| || ||||| Sbjct 681 CTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 622 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 621 AAAGATCTGCAT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450442786785560