Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 96.9 4e-15
seq43461 89.7 6e-13
>seq1566
Length=12574
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||| ||||| || |||||||||||||||||||||||||| ||||| || || |||
Sbjct 6400 AGCTGCTTCCTGCTGTGCATGAAGGATGACAGCATTGAGGGCATTTACGACACCCTGAAG 6341
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
||||||| | |||||| |||| | | |||||||| ||
Sbjct 6340 CAGTGCGCACTCATCTCTAAGTCGGCTGGGGGTATTGG 6303
>seq43461
Length=23750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
|||||| || | ||| || |||| |||||||||| | ||||| ||||| | | |||
Sbjct 23147 GAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTC 23206
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGG 78608
|||||| |||| ||||||||| ||||| || |||||||||||
Sbjct 23207 GTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGG 23248
Score = 89.7 bits (98), Expect = 6e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
|||||| || | ||| || |||| |||||||||| | ||||| ||||| | | |||
Sbjct 23297 GAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTC 23356
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGG 78608
|||||| |||| ||||||||| ||||| || |||||||||||
Sbjct 23357 GTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGG 23398
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455
||||||||||| || ||||| ||||||||| |||| ||||||||| | | ||||| |||
Sbjct 23248 CCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTCCATTGAGCCCTAC 23189
Query 20456 ACGACCAACATCTAC 20470
|| | ||||||||||
Sbjct 23188 ACCAGCAACATCTAC 23174
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455
||||||||||| || ||||| ||||||||| |||| ||||||||| | | ||||| |||
Sbjct 23398 CCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTCCATTGAGCCCTAC 23339
Query 20456 ACGACCAACATCTAC 20470
|| | ||||||||||
Sbjct 23338 ACCAGCAACATCTAC 23324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548097931144080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |