Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1566 96.9 4e-15 seq43461 89.7 6e-13 >seq1566 Length=12574 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||||||||||||||||||||| ||||| || || ||| Sbjct 6400 AGCTGCTTCCTGCTGTGCATGAAGGATGACAGCATTGAGGGCATTTACGACACCCTGAAG 6341 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||||||| | |||||| |||| | | |||||||| || Sbjct 6340 CAGTGCGCACTCATCTCTAAGTCGGCTGGGGGTATTGG 6303 >seq43461 Length=23750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| || | ||| || |||| |||||||||| | ||||| ||||| | | ||| Sbjct 23147 GAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTC 23206 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGG 78608 |||||| |||| ||||||||| ||||| || ||||||||||| Sbjct 23207 GTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGG 23248 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| || | ||| || |||| |||||||||| | ||||| ||||| | | ||| Sbjct 23297 GAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTC 23356 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGG 78608 |||||| |||| ||||||||| ||||| || ||||||||||| Sbjct 23357 GTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGG 23398 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455 ||||||||||| || ||||| ||||||||| |||| ||||||||| | | ||||| ||| Sbjct 23248 CCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTCCATTGAGCCCTAC 23189 Query 20456 ACGACCAACATCTAC 20470 || | |||||||||| Sbjct 23188 ACCAGCAACATCTAC 23174 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455 ||||||||||| || ||||| ||||||||| |||| ||||||||| | | ||||| ||| Sbjct 23398 CCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTCCATTGAGCCCTAC 23339 Query 20456 ACGACCAACATCTAC 20470 || | |||||||||| Sbjct 23338 ACCAGCAACATCTAC 23324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548097931144080