Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq43461 96.9 4e-15 seq35167 95.1 1e-14 seq41089 86.0 7e-12 seq38745 86.0 7e-12 seq35559 84.2 2e-11 >seq43461 Length=23750 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| | ||| ||| ||| || | || ||||| || || |||||||| |||||| || Sbjct 23275 GGCCTCAGAAACAGCCTCCTCATGTCTCCCATGCCGACTGCTTCGACGGCCCAGATCCTG 23216 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| | | ||||| ||||| | |||||||||| |||| || ||| || Sbjct 23215 GGCAACAACGAGTCCATTGAGCCCTACACCAGCAACATCTACACGCGCAGGGTCCTCTCA 23156 Query 55598 GGTGAGTT 55605 || ||||| Sbjct 23155 GGAGAGTT 23148 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| || | || ||||| || || |||||||| |||||| |||||||||||||| | Sbjct 23411 CCTCCTCATGTCTCCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTC 23352 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 | ||||| ||||| | |||||||||| |||| || ||| |||| ||||| Sbjct 23351 CATTGAGCCCTACACCAGCAACATCTACACGCGCAGGGTCCTCTCAGGAGAGTT 23298 >seq35167 Length=21438 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | ||||| ||||| ||||| || |||||||| Sbjct 12100 GTAAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCACCGTGCAGCCTGGTGCCAAACTGA 12159 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || |||||||||||||| |||||| || |||||||| || || | | Sbjct 12160 CCAATGGGCTGTAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 12219 Query 152149 ATCGT 152153 || || Sbjct 12220 ATTGT 12224 >seq41089 Length=22409 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| || ||||||||||| || |||||||| Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807 Query 74892 AC 74893 || Sbjct 10806 AC 10805 >seq38745 Length=161409 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | |||||||| || Sbjct 113735 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCGAACTGA 113794 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | | || | ||||| || |||||||| ||||||||||||||| Sbjct 113795 CCAATAGGTTGTAGCAAATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 113854 Query 117425 ATCGT 117429 || || Sbjct 113855 ATAGT 113859 >seq35559 Length=19442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || ||||| ||||| ||||||||||| ||||||| |||||||| ||||| Sbjct 4194 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCTTCCAGAGAGATGTTTTCCAT 4135 Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542 |||| ||||| |||| ||| Sbjct 4134 GAAGTCAAAAGGATTCTCTGC 4114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546790149668600