Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq43461 96.9 4e-15
seq35167 95.1 1e-14
seq41089 86.0 7e-12
seq38745 86.0 7e-12
seq35559 84.2 2e-11
>seq43461
Length=23750
Score = 96.9 bits (106), Expect = 4e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||||| | ||| ||| ||| || | || ||||| || || |||||||| |||||| ||
Sbjct 23275 GGCCTCAGAAACAGCCTCCTCATGTCTCCCATGCCGACTGCTTCGACGGCCCAGATCCTG 23216
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||||||| | | ||||| ||||| | |||||||||| |||| || ||| ||
Sbjct 23215 GGCAACAACGAGTCCATTGAGCCCTACACCAGCAACATCTACACGCGCAGGGTCCTCTCA 23156
Query 55598 GGTGAGTT 55605
|| |||||
Sbjct 23155 GGAGAGTT 23148
Score = 93.3 bits (102), Expect = 5e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
||| ||| || | || ||||| || || |||||||| |||||| |||||||||||||| |
Sbjct 23411 CCTCCTCATGTCTCCCATGCCGACTGCTTCGACGGCCCAGATCCTGGGCAACAACGAGTC 23352
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605
| ||||| ||||| | |||||||||| |||| || ||| |||| |||||
Sbjct 23351 CATTGAGCCCTACACCAGCAACATCTACACGCGCAGGGTCCTCTCAGGAGAGTT 23298
>seq35167
Length=21438
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | |||||| | ||||| ||||| ||||| || ||||||||
Sbjct 12100 GTAAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCACCGTGCAGCCTGGTGCCAAACTGA 12159
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| || |||||||||||||| |||||| || |||||||| || || | |
Sbjct 12160 CCAATGGGCTGTAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 12219
Query 152149 ATCGT 152153
|| ||
Sbjct 12220 ATTGT 12224
>seq41089
Length=22409
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | || |||||||| || || | |||||||
Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| || ||||||||||| || ||||||||
Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807
Query 74892 AC 74893
||
Sbjct 10806 AC 10805
>seq38745
Length=161409
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| || |||| ||| ||||||||||| |||||| ||| | |||||||| ||
Sbjct 113735 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCGAACTGA 113794
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | | || | ||||| || |||||||| |||||||||||||||
Sbjct 113795 CCAATAGGTTGTAGCAAATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 113854
Query 117425 ATCGT 117429
|| ||
Sbjct 113855 ATAGT 113859
>seq35559
Length=19442
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
||| ||||| || ||||| ||||| ||||||||||| ||||||| |||||||| |||||
Sbjct 4194 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCTTCCAGAGAGATGTTTTCCAT 4135
Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542
|||| ||||| |||| |||
Sbjct 4134 GAAGTCAAAAGGATTCTCTGC 4114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546790149668600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |