Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq43062 118 1e-21 seq50785 111 2e-19 >seq43062 Length=24714 Score = 118 bits (130), Expect = 1e-21 Identities = 256/373 (69%), Gaps = 24/373 (6%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || |||||||||||| || ||| || |||||| | |||| |||||||| ||| Sbjct 7625 TTCCCCATCGCCTACG---TCATGACCCTGCACAAGGAGTTTGAGACCTTCGAGCGGCTC 7569 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 | ||||| | ||| || || ||| |||||||| |||||||||| ||||| || Sbjct 7568 TTCAGGGCAGTGTACATGCCCCAAAACATCTACTGCATCCACGTGGATGCCAAG----GC 7513 Query 13812 GACGAGTTCAT--CCGGG--GCGTCTCGGCCATCGCCAGG-TGCTTCCCTAACGTGGCCC 13866 | | || || | || | ||| ||||| || || |||||||| || | | || Sbjct 7512 GCC-AGCTCTTTTCCAGCAAGCGGTTCGGCGCCTGCTGGGCTGCTTCCCCAATGCGTTCC 7454 Query 13867 TGGCC-CACCGGCTGCACGACGTGGTGTACGGCT---CCTGGAGTCGCGTGCAGGCCGAC 13922 | || ||| || | || ||||| || ||| ||| ||| ||| ||| ||| Sbjct 7453 TCTCCTCACAGGTGGAGCGG-GTGGTCTATGGCGGTGCCTCC---CGCCTGCGGGCTGAC 7398 Query 13923 CTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTG 13982 ||| ||||||| |||||| ||||| |||| ||| | |||||||||||| Sbjct 7397 CTCCACTGCATGAGAGACCTGTTGGCCTCGGCCGTGCCCTGGCGCTACCTGCTCAACACC 7338 Query 13983 TGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTG 14042 ||||| |||||| || | |||||||||| ||||||||| ||| |||||||| ||| Sbjct 7337 TGCGGCCAGGACTTTCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGAAGGGCCTT 7278 Query 14043 GGCGGCAAGAACG 14055 || || ||||||| Sbjct 7277 GGGGGGAAGAACG 7265 >seq50785 Length=242 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||||| |||||||||||||| || || |||||| |||| Sbjct 106 CCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAA 47 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCA 13774 ||||||||||||||||| ||||| || || |||||||||| || Sbjct 46 ATCGAGATGTTCGAGCGGCTCCTCCGGTCCCTCTACGCCCCCCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658226560920320