Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq27582 87.8 1e-12 >seq27582 Length=3938 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || ||||| || || || |||| Sbjct 3383 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAA 3324 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||||| || ||| ||| |||| ||||| || Sbjct 3323 GACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 3264 Query 28003 CGT 28005 ||| Sbjct 3263 CGT 3261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || ||||| || || || |||| Sbjct 3611 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAA 3552 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||||| || ||| ||| |||| ||||| || Sbjct 3551 GACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 3492 Query 28003 CGT 28005 ||| Sbjct 3491 CGT 3489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355592386846239