Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq27582 116 2e-21 seq40441 86.0 4e-12 >seq27582 Length=3938 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| |||||||| ||| Sbjct 3476 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAGT 3417 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| ||||| | || || ||||| Sbjct 3416 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGATCA 3358 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||||| |||||| || ||||||||| Sbjct 3357 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAA 3298 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3297 CATCCAGAAGGAGTCCAC 3280 Score = 116 bits (128), Expect = 2e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||| ||||| ||||| || Sbjct 3707 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3648 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| ||||| | || || || Sbjct 3647 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGA 3589 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||| ||||| || |||||||||| |||||| || |||||| Sbjct 3588 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTA 3529 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 3528 CAACATCCAGAAGGAGTCCAC 3508 >seq40441 Length=3214 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || ||||| || || ||||| || Sbjct 151 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCC 210 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||| ||||| | || || || Sbjct 211 AGTGACACCATTGAGAATGTGAAGGC-TAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 269 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || || || ||||| || |||||||| | || || | || || Sbjct 270 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTA 329 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 330 CAACATCCAGAAGGAGTCCAC 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337753132786556