Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 116 2e-21
seq40441 86.0 4e-12
>seq27582
Length=3938
Score = 116 bits (128), Expect = 2e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || |||||||| |||||||| |||
Sbjct 3476 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAGT 3417
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| ||||| | || || |||||
Sbjct 3416 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGATCA 3358
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||||| |||||| || |||||||||
Sbjct 3357 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAA 3298
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 3297 CATCCAGAAGGAGTCCAC 3280
Score = 116 bits (128), Expect = 2e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || ||||| || || || || ||||| ||||| ||||| ||
Sbjct 3707 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3648
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || | | ||||| ||||| | || || ||
Sbjct 3647 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGA 3589
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||| | | || ||||| ||||| || |||||||||| |||||| || ||||||
Sbjct 3588 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTA 3529
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||||||
Sbjct 3528 CAACATCCAGAAGGAGTCCAC 3508
>seq40441
Length=3214
Score = 86.0 bits (94), Expect = 4e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || || ||||| || || || || ||||| || || ||||| ||
Sbjct 151 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCC 210
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || || ||||| ||||| | || || ||
Sbjct 211 AGTGACACCATTGAGAATGTGAAGGC-TAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 269
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||| | | || || || ||||| || |||||||| | || || | || ||
Sbjct 270 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTA 329
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||||||
Sbjct 330 CAACATCCAGAAGGAGTCCAC 350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337753132786556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |