Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq27582 147 5e-30 seq40441 141 2e-28 >seq27582 Length=3938 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| || ||||| || || |||| ||||| |||| || ||| | ||||| Sbjct 2352 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 2411 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 2412 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 2471 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 2472 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 2531 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 2532 CTTGCCAGTCA 2542 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 2580 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATC 2639 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 2640 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 2699 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 2700 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 2759 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 2760 CTTGCCAGTCA 2770 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| || || |||| |||||||||| ||| || | || || Sbjct 3264 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3323 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 3324 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3383 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 3384 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3443 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3444 CTTGCCAGTCA 3454 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || ||||| || || |||| ||||| |||| || ||| | || || Sbjct 2808 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 2867 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 2868 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 2927 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 2928 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 2987 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 2988 CTTGCCAGTCA 2998 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| || || |||| |||||||||| ||| || | || || Sbjct 3492 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3551 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 3552 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3611 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 3612 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 3671 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3672 CTTGCCAGTCA 3682 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| || || || | ||||| |||| || ||| | || || Sbjct 3036 CAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTC 3095 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 3096 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 3155 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 3156 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3215 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3216 CTTGCCAGTCA 3226 >seq40441 Length=3214 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || ||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 366 CAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 307 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||||||||| Sbjct 306 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 247 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | |||||| || Sbjct 246 CTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGT 187 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | |||||||| Sbjct 186 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 151 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| || ||||| || || |||| ||||| || | || || | ||||| Sbjct 594 CAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 535 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||||||||| Sbjct 534 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 475 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | |||||| || Sbjct 474 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGT 415 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 414 CTTGCCAGTCA 404 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 822 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 763 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| || || ||||||||||| Sbjct 762 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 703 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | || || || | ||||| || Sbjct 702 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGT 643 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 642 CTTGCCAGTCA 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191579956246358