Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 147 5e-30
seq40441 141 2e-28
>seq27582
Length=3938
Score = 147 bits (162), Expect = 5e-30
Identities = 147/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||| || || |||| ||||| |||| || ||| | |||||
Sbjct 2352 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 2411
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || ||||| ||||| |||||||||||
Sbjct 2412 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 2471
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| ||||||||||| || || || || | ||||| ||
Sbjct 2472 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 2531
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 2532 CTTGCCAGTCA 2542
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||| || || |||| ||||| |||| || || | |||||
Sbjct 2580 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATC 2639
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| |||||||||||
Sbjct 2640 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 2699
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| ||||||||||| || || || || | ||||| ||
Sbjct 2700 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 2759
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 2760 CTTGCCAGTCA 2770
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || ||||| || || |||| |||||||||| ||| || | || ||
Sbjct 3264 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3323
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || ||||| ||||| |||||||||||
Sbjct 3324 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3383
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| ||||||||||| || || || || | ||||| ||
Sbjct 3384 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3443
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 3444 CTTGCCAGTCA 3454
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| || || ||||| || || |||| ||||| |||| || ||| | || ||
Sbjct 2808 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 2867
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || ||||| ||||| |||||||||||
Sbjct 2868 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 2927
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 2928 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 2987
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 2988 CTTGCCAGTCA 2998
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || ||||| || || |||| |||||||||| ||| || | || ||
Sbjct 3492 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3551
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || ||||| ||||| |||||||||||
Sbjct 3552 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3611
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 3612 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 3671
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 3672 CTTGCCAGTCA 3682
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || ||||| || || || | ||||| |||| || ||| | || ||
Sbjct 3036 CAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTC 3095
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| |||||||||||
Sbjct 3096 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 3155
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| ||||||||||| || || || || | ||||| ||
Sbjct 3156 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3215
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 3216 CTTGCCAGTCA 3226
>seq40441
Length=3214
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || ||||| ||||| || || |||| ||||| || | || || | |||||
Sbjct 366 CAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 307
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| ||||| |||||||||||
Sbjct 306 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 247
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || |||||||| || || || || | |||||| ||
Sbjct 246 CTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGT 187
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||| |||| || || | || | ||||||||
Sbjct 186 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 151
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||| || || |||| ||||| || | || || | |||||
Sbjct 594 CAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 535
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| ||||| |||||||||||
Sbjct 534 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 475
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || |||||||| || || || || | |||||| ||
Sbjct 474 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGT 415
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 414 CTTGCCAGTCA 404
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||||||||| ||||| || || |||| ||||| || | || || | |||||
Sbjct 822 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 763
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| || || |||||||||||
Sbjct 762 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 703
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| || |||||||| | || || || | ||||| ||
Sbjct 702 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGT 643
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 642 CTTGCCAGTCA 632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191579956246358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |