Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq21600 98.7 8e-16 seq23237 96.9 3e-15 >seq21600 Length=11202 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| ||||||||||| || ||||| || Sbjct 9008 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCTCCCTCTTCTCTGGTGCT-AAA 9066 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 9067 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCTTTTGC 9126 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 9127 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 9166 >seq23237 Length=6024 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | ||||| | ||| ||| | |||||| || || Sbjct 2185 TTGAGCTCCCTGCTGAGAACTATATTAATCCTGTTTTTCAAAGGACGATTCTTCTCAGGA 2126 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 2125 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 2078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405855020752702