Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq35559 113 4e-20 seq41089 104 2e-17 >seq35559 Length=19442 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | |||||||| || ||||| |||||||| || | || |||||||| || Sbjct 2952 ATTCATACCT-CATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCC 2894 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||| ||||| || ||||| || || Sbjct 2893 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGC 2834 Query 4682 GGCAAACGCTACTA 4695 ||||||||||||| Sbjct 2833 TGCAAACGCTACTA 2820 >seq41089 Length=22409 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || ||||| || |||||||| || || ||||| || Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807 Query 4692 AC 4693 || Sbjct 10806 AC 10805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||| ||| | |||||| ||||| || || ||||||||||||||||| |||| |||||| Sbjct 5522 TCTTCTTACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATG 5463 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || ||||||| | ||| || | || || | |||||||| || | || || | || Sbjct 5462 TGAGATAAAGTGTTTTTCATCTGCTTTCAGCCTGTTCCAGTGAGGAAGGTCCTTTGACAA 5403 Query 5045 ATCAAC 5050 |||||| Sbjct 5402 ATCAAC 5397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426725573046581