Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 122 2e-22
seq40441 114 3e-20
>seq27582
Length=3938
Score = 122 bits (134), Expect = 2e-22
Identities = 162/224 (72%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | || ||||| || || || ||||| || ||||||||||| |||| | ||
Sbjct 2572 CTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTA 2631
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || || || || ||||| ||||||||||| || | | || |||
Sbjct 2632 CGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCT 2691
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
||||| || || || || || ||| |||| | | |||| ||| ||| |||||
Sbjct 2692 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCC 2748
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||| || || |||||||| |||| ||||||
Sbjct 2749 AGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2792
Score = 116 bits (128), Expect = 9e-21
Identities = 154/211 (73%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || |||||||||||||||| || || | || ||||| |
Sbjct 3270 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCA 3328
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || ||||| ||||||||||| || | | || |||||||| || || |
Sbjct 3329 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 3388
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
| || || ||| |||| | | |||| ||| ||| ||||| ||||| ||||| |
Sbjct 3389 TCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATAGTCT 3445
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || |||||||| |||| ||||||
Sbjct 3446 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476
Score = 109 bits (120), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| |||| | ||| | ||||||
Sbjct 2353 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 2412
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| ||||||||||| || | | || |||||||| ||
Sbjct 2413 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2472
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2473 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2529
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2530 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2564
Score = 109 bits (120), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || ||||| || ||||||||||| |||| | ||| | || |||
Sbjct 2809 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCT 2868
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| ||||||||||| || | | || |||||||| ||
Sbjct 2869 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2928
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2929 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2985
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2986 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020
Score = 107 bits (118), Expect = 4e-18
Identities = 152/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || || |||||||| |||| | ||| | || ||||| |
Sbjct 3042 CAAG-TGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCA 3100
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || ||||| ||||||||||| || | | || |||||||| || || |
Sbjct 3101 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 3160
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
| || || ||| |||| | | |||| ||| ||| ||||| ||||| ||||| |
Sbjct 3161 TCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATAGTCT 3217
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || |||||||| |||| ||||||
Sbjct 3218 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248
Score = 104 bits (114), Expect = 5e-17
Identities = 153/214 (71%), Gaps = 7/214 (3%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || |||||||||||||||| || || | || ||||| |
Sbjct 3498 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCA 3556
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || ||||| ||||||||||| || | | || |||||||| || || |
Sbjct 3557 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 3616
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
| || || ||| |||| | | |||| ||| ||| || || || || || || |
Sbjct 3617 TCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 3673
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|||| || || |||||||| |||| |||||| ||
Sbjct 3674 TGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3707
>seq40441
Length=3214
Score = 114 bits (126), Expect = 3e-20
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| || ||||||||||| || | | || | ||||||
Sbjct 365 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 306
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | || |||||||| ||
Sbjct 305 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 246
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || ||||| || ||
Sbjct 245 TGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATG 189
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || |||||||| |||| |||||||||
Sbjct 188 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 151
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| ||||| || ||||| || ||||||||||| || | | || | ||||||
Sbjct 593 AGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 534
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | || |||||||| ||
Sbjct 533 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 474
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || ||||| || ||
Sbjct 473 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATG 417
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 416 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| || | | || | ||||||
Sbjct 821 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 762
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | ||| |||||||| ||
Sbjct 761 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCC 702
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| | ||| ||||| || || || ||
Sbjct 701 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTC 642
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || |||||||| |||| ||||||
Sbjct 641 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152900434286447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |