Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq27582 122 2e-22 seq40441 114 3e-20 >seq27582 Length=3938 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || ||||| || || || ||||| || ||||||||||| |||| | || Sbjct 2572 CTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTA 2631 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || ||||| ||||||||||| || | | || ||| Sbjct 2632 CGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCT 2691 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || || ||| |||| | | |||| ||| ||| ||||| Sbjct 2692 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCC 2748 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| || || |||||||| |||| |||||| Sbjct 2749 AGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2792 Score = 116 bits (128), Expect = 9e-21 Identities = 154/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || |||||||||||||||| || || | || ||||| | Sbjct 3270 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCA 3328 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | || |||||||| || || | Sbjct 3329 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 3388 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || ||| |||| | | |||| ||| ||| ||||| ||||| ||||| | Sbjct 3389 TCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATAGTCT 3445 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| |||| |||||| Sbjct 3446 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| |||| | ||| | |||||| Sbjct 2353 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 2412 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 2413 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2472 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 2473 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2529 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2530 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2564 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | ||| | || ||| Sbjct 2809 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCT 2868 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 2869 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2928 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 2929 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2985 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2986 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || || |||||||| |||| | ||| | || ||||| | Sbjct 3042 CAAG-TGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCA 3100 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | || |||||||| || || | Sbjct 3101 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 3160 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || ||| |||| | | |||| ||| ||| ||||| ||||| ||||| | Sbjct 3161 TCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATAGTCT 3217 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| |||| |||||| Sbjct 3218 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || |||||||||||||||| || || | || ||||| | Sbjct 3498 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCA 3556 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | || |||||||| || || | Sbjct 3557 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 3616 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || ||| |||| | | |||| ||| ||| || || || || || || | Sbjct 3617 TCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 3673 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || |||||||| |||| |||||| || Sbjct 3674 TGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3707 >seq40441 Length=3214 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || ||||||||||| || | | || | |||||| Sbjct 365 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 306 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | || |||||||| || Sbjct 305 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 246 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 245 TGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATG 189 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| ||||||||| Sbjct 188 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 151 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || ||||||||||| || | | || | |||||| Sbjct 593 AGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 534 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | || |||||||| || Sbjct 533 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 474 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 473 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGCGTGATG 417 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 416 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 821 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 762 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | ||| |||||||| || Sbjct 761 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCC 702 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| | ||| ||||| || || || || Sbjct 701 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTC 642 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 641 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152900434286447