Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq15132 147 3e-30 seq40134 131 2e-25 >seq15132 Length=16380 Score = 147 bits (162), Expect = 3e-30 Identities = 213/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || || || ||||| || || |||||| |||| || ||| | | || Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| |||||||||||||||||||||||| | |||| Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || | || |||| || || || ||||||||||| || || | ||| | ||| Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| | |||||| || | |||||||||| Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 11533 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || | ||||| ||||| | || || || || || || |||||||||| Sbjct 11534 ATCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTG 11591 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| ||| || ||||| || ||||| ||| |||| || ||||| || ||||| || Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| ||||||||| || ||||| || || || |||||||| | || || Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || || || | | || || Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493 Query 9484 TG 9485 || Sbjct 13494 TG 13495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| ||||| | || || || || || | || || || || |||||| ||| Sbjct 14966 ACCTTTAACCCCCATGGGCGTGGGGCAGTCCAGCCCTACTGGGGGAAGGCTCCTTGTGTA 15025 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||| |||||||| |||||||||||||| || ||||| || |||||| | || Sbjct 15026 GTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTATAATCGTAATCGCTGTTGTAAGTCGG 15085 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAA 10070 |||||||||||||| | ||||| |||| || ||||| Sbjct 15086 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAAA 15126 >seq40134 Length=18165 Score = 131 bits (144), Expect = 2e-25 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 9228 GGTTTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGG 9287 ||| || ||||| | |||||| |||| |||||||| || |||||||||||||| || Sbjct 5115 GGTCTCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGG 5056 Query 9288 ATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTA 9347 ||| ||| ||||||| | ||||| || | |||||| || | ||||||| |||||||| Sbjct 5055 ATGCTCTCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTA 4996 Query 9348 CATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTC 9407 ||| ||| || || | ||| ||||| |||| || || | ||||| || | | | Sbjct 4995 CATGCAGAGTCCCGGCAGCAGCCCAAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTT 4936 Query 9408 GGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 ||| | | | || |||| |||||| ||| | | || ||||| |||||| ||||| Sbjct 4935 GGGGATGGCAGACGGGTAGACCATGTGAACCGGAGCATCGGTGACCATGGGGGGGTACAT 4876 Query 9468 TTCACCGTCAATCATCT 9484 || || || | || || Sbjct 4875 CTCTCCATCCACCACCT 4859 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 || ||| ||| |||||| || || || || || | ||| |||| || ||| | Sbjct 7410 GGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCA 7351 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||||||||| || ||||| ||||||||| | || ||||||||| ||| Sbjct 7350 AAGCCAGTTTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTT 7291 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | || || || ||||| || ||||| || | ||| | ||||| || || || || Sbjct 7290 CCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGCTTTCCCCAAAAATA 7231 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||||||| |||| || || | || || || | || | ||||| ||| || | |||| Sbjct 7230 CCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCAGAGCATCAATGTCT 7171 Query 8543 CCGTAAAG 8550 || || || Sbjct 7170 CCATACAG 7163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716318917513280