Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq15132 147 3e-30
seq40134 131 2e-25
>seq15132
Length=16380
Score = 147 bits (162), Expect = 3e-30
Identities = 213/298 (71%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || || || ||||| || || |||||| |||| || ||| | | ||
Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| | ||| |||||||||||||||||||||||| | ||||
Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||| || | || |||| || || || ||||||||||| || || | ||| | |||
Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527
| ||||| |||||||| || || |||||||| | |||||| || | ||||||||||
Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 11533
Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
| || || | ||||| ||||| | || || || || || || ||||||||||
Sbjct 11534 ATCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTG 11591
Score = 131 bits (144), Expect = 2e-25
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
|| |||| ||| || ||||| || ||||| ||| |||| || ||||| || ||||| ||
Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || |||| ||||||||| || ||||| || || || |||||||| | || ||
Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| ||||| |||| || || |||| | ||| || || || | | || ||
Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | |||| ||| || || | || ||||||||||| || |||||||||
Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493
Query 9484 TG 9485
||
Sbjct 13494 TG 13495
Score = 87.8 bits (96), Expect = 3e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| ||||| | || || || || || | || || || || |||||| |||
Sbjct 14966 ACCTTTAACCCCCATGGGCGTGGGGCAGTCCAGCCCTACTGGGGGAAGGCTCCTTGTGTA 15025
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
||||| |||||||| |||||||||||||| || ||||| || |||||| | ||
Sbjct 15026 GTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTATAATCGTAATCGCTGTTGTAAGTCGG 15085
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAA 10070
|||||||||||||| | ||||| |||| || |||||
Sbjct 15086 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAAA 15126
>seq40134
Length=18165
Score = 131 bits (144), Expect = 2e-25
Identities = 183/257 (71%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 9228 GGTTTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGG 9287
||| || ||||| | |||||| |||| |||||||| || |||||||||||||| ||
Sbjct 5115 GGTCTCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGG 5056
Query 9288 ATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTA 9347
||| ||| ||||||| | ||||| || | |||||| || | ||||||| ||||||||
Sbjct 5055 ATGCTCTCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTA 4996
Query 9348 CATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTC 9407
||| ||| || || | ||| ||||| |||| || || | ||||| || | | |
Sbjct 4995 CATGCAGAGTCCCGGCAGCAGCCCAAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTT 4936
Query 9408 GGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467
||| | | | || |||| |||||| ||| | | || ||||| |||||| |||||
Sbjct 4935 GGGGATGGCAGACGGGTAGACCATGTGAACCGGAGCATCGGTGACCATGGGGGGGTACAT 4876
Query 9468 TTCACCGTCAATCATCT 9484
|| || || | || ||
Sbjct 4875 CTCTCCATCCACCACCT 4859
Score = 100 bits (110), Expect = 4e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
|| ||| ||| |||||| || || || || || | ||| |||| || ||| |
Sbjct 7410 GGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCA 7351
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| || ||||||||||| || ||||| ||||||||| | || ||||||||| |||
Sbjct 7350 AAGCCAGTTTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTT 7291
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | || || || ||||| || ||||| || | ||| | ||||| || || || ||
Sbjct 7290 CCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGCTTTCCCCAAAAATA 7231
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
||||||| |||| || || | || || || | || | ||||| ||| || | ||||
Sbjct 7230 CCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCAGAGCATCAATGTCT 7171
Query 8543 CCGTAAAG 8550
|| || ||
Sbjct 7170 CCATACAG 7163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716318917513280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |