Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 145 2e-29
>seq27582
Length=3938
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||||||||| || || |||
Sbjct 2561 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 2504
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 2503 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 2444
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| ||||||||| | ||||| |||| || |||
Sbjct 2443 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAACA 2384
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 2383 TCCAGAAGGAGTCCACCCTGCACCTTGT 2356
Score = 140 bits (154), Expect = 8e-28
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||||||||| || || |||
Sbjct 3017 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 2960
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 2959 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 2900
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| ||||| ||| | ||||| |||| || |||
Sbjct 2899 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAACA 2840
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || |||||||||||
Sbjct 2839 TCCAGAAGGAGTCCACCCTGCATCTTGT 2812
Score = 131 bits (144), Expect = 4e-25
Identities = 165/222 (74%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 3701 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 3644
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 3643 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 3584
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| | || ||||| || || || ||||| ||||| ||| | || |||| ||||||| |||
Sbjct 3583 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCAC-CTTGTCCGATTACAAC 3525
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| | || || | ||||||
Sbjct 3524 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCAGA 3483
Score = 127 bits (140), Expect = 5e-24
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || ||||| || || || || || |||
Sbjct 2789 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 2732
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 2731 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGC 2672
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 2671 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTACAACA 2612
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| ||||| || | ||||||
Sbjct 2611 TCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTCAGA 2571
Score = 122 bits (134), Expect = 2e-22
Identities = 163/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || ||||| || || || || || |||
Sbjct 3473 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 3416
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 3415 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 3356
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| | || ||||| || || || ||||| ||||| ||| | || |||| ||||||| |||
Sbjct 3355 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCAC-CTTGTCCGATTACAAC 3297
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| | || || | ||||||
Sbjct 3296 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCAGA 3255
Score = 118 bits (130), Expect = 3e-21
Identities = 160/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || ||||| || || || || || |||
Sbjct 3245 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 3188
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 3187 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGC 3128
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| ||||| ||| | ||||| |||| || |||
Sbjct 3127 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAACA 3068
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| || || || || || ||||| | || || | ||||||
Sbjct 3067 TTCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTCAGA 3027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202771022366858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |