Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq27582 145 2e-29 >seq27582 Length=3938 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 2561 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 2504 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 2503 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 2444 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | ||||| |||| || ||| Sbjct 2443 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAACA 2384 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 2383 TCCAGAAGGAGTCCACCCTGCACCTTGT 2356 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 3017 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 2960 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 2959 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 2900 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| ||| | ||||| |||| || ||| Sbjct 2899 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAACA 2840 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||||||||| Sbjct 2839 TCCAGAAGGAGTCCACCCTGCATCTTGT 2812 Score = 131 bits (144), Expect = 4e-25 Identities = 165/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 3701 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 3644 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 3643 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 3584 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| ||||| ||| | || |||| ||||||| ||| Sbjct 3583 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCAC-CTTGTCCGATTACAAC 3525 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| | || || | |||||| Sbjct 3524 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCAGA 3483 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || || || || || ||| Sbjct 2789 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 2732 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 2731 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGC 2672 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 2671 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTACAACA 2612 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| ||||| || | |||||| Sbjct 2611 TCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTCAGA 2571 Score = 122 bits (134), Expect = 2e-22 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || || || || || ||| Sbjct 3473 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 3416 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 3415 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 3356 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| ||||| ||| | || |||| ||||||| ||| Sbjct 3355 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCAC-CTTGTCCGATTACAAC 3297 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| | || || | |||||| Sbjct 3296 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCAGA 3255 Score = 118 bits (130), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || || || || || ||| Sbjct 3245 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGA--GCCCAGTG 3188 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || ||||| || |||| Sbjct 3187 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGC 3128 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| ||| | ||||| |||| || ||| Sbjct 3127 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAACA 3068 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || || || || ||||| | || || | |||||| Sbjct 3067 TTCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTCAGA 3027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202771022366858