Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq307 105 7e-18 >seq307 Length=12913425 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||||||||||||||| |||||||||||||| || | || ||||| ||||| || Sbjct 4487515 ATACCTCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 4487456 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | |||||| || | || || || ||||||||||| || || || || | ||||| Sbjct 4487455 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAA 4487396 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 4487395 AAGCTACTACACGTTC 4487380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517521320642040