Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3752 120 4e-22 seq307 111 2e-19 seq230 87.8 2e-12 >seq3752 Length=30765690 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || |||||||| ||||| ||||| | ||| | Sbjct 11115985 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCT 11116044 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 11116045 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11116104 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 11116105 CAACCACTCTCTCACC 11116120 >seq307 Length=12913425 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 4487512 CCTCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4487453 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4487452 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAG 4487393 Query 24277 C 24277 | Sbjct 4487392 C 4487392 >seq230 Length=477728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || || |||| || || Sbjct 345689 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGC 345748 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || || ||||| || || || || ||| | | || || | |||||||| Sbjct 345749 TCCTCTTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGC 345808 Query 54149 TCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 345809 TCCAGGTAGATGGCAAAAGCCCCAGG 345834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593693747035440