Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq422 150 2e-31 seq144 129 7e-25 >seq422 Length=1517143 Score = 150 bits (166), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 83125 GCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGG 83184 |||||| | || | | ||||||||||||||||||||| | |||||||||||| || || Sbjct 109897 GCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCAGACGGG 109956 Query 83185 AGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGG 83244 |||||| ||| ||| |||| | ||| |||| | ||| ||| || || Sbjct 109957 GGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGCGGGAAGGG 110016 Query 83245 CAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACT 83303 |||||||||| ||||||| |||||| || || || | ||| ||||| |||||||||| Sbjct 110017 CAGGGCCTCTTTCAGGAAGGTGAAGAGGGGGTGCGCGTTCTGC-CCGTTCACCTCGCACT 110075 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 ||||||| || || || || |||| | | ||||| || ||||| ||||||| ||| || Sbjct 110076 TCTCGAACAGGATGAAATTGGGCTTGTACCCGTTGCCGGGACGAACGTGCTCCAGCGACA 110135 Query 83364 GCAAGATCTC 83373 ||| ||| || Sbjct 110136 GCAGGATTTC 110145 Score = 150 bits (166), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 83125 GCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGG 83184 |||||| | || | | ||||||||||||||||||||| | |||||||||||| || || Sbjct 111345 GCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCAGACGGG 111404 Query 83185 AGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGG 83244 |||||| ||| ||| |||| | ||| |||| | ||| ||| || || Sbjct 111405 GGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGCGGGAAGGG 111464 Query 83245 CAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACT 83303 |||||||||| ||||||| |||||| || || || | ||| ||||| |||||||||| Sbjct 111465 CAGGGCCTCTTTCAGGAAGGTGAAGAGGGGGTGCGCGTTCTGC-CCGTTCACCTCGCACT 111523 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 ||||||| || || || || |||| | | ||||| || ||||| ||||||| ||| || Sbjct 111524 TCTCGAACAGGATGAAATTGGGCTTGTACCCGTTGCCGGGACGAACGTGCTCCAGCGACA 111583 Query 83364 GCAAGATCTC 83373 ||| ||| || Sbjct 111584 GCAGGATTTC 111593 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || ||||||| ||||||||||| || ||||| || || || |||||| || | || | Sbjct 110274 TTACCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGAACCTGCAGCCCGCGGGGCCCGA 110333 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||||||||| |||||||| | ||| | | || ||| ||| | |||||||| |||| Sbjct 110334 AGCGCCGCTGGAGCTCGTTGAGCTGCAGGAAGTCGCGGGTGGTGGTGCCTCAGAGCGACG 110393 Query 83508 CTACGTT 83514 | ||||| Sbjct 110394 CCACGTT 110400 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || ||||||| ||||||||||| || ||||| || || || |||||| || | || | Sbjct 111722 TTACCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGAACCTGCAGCCCGCGGGGCCCGA 111781 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||||||||| |||||||| | ||| | | || ||| ||| | |||||||| |||| Sbjct 111782 AGCGCCGCTGGAGCTCGTTGAGCTGCAGGAAGTCGCGGGTGGTGGTGCCTCAGAGCGACG 111841 Query 83508 CTACGTT 83514 | ||||| Sbjct 111842 CCACGTT 111848 >seq144 Length=3598942 Score = 129 bits (142), Expect = 7e-25 Identities = 217/303 (72%), Gaps = 16/303 (5%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || ||| || |||| |||||| | ||| | || Sbjct 3364724 CTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGCGCTGTAACGGCGGAAAGGT 3364667 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || || | |||||||| |||||||||||||||||||| |||||| ||| | || Sbjct 3364666 TCTCCTTCGGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGGAGCGTCGGACG 3364607 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCA-TGTCGTCGCTAGGCGC 83241 || ||||| |||| | ||| ||| ||| || ||| ||| | |||||| || || Sbjct 3364606 GGGCTCCAGGTGATGAACCTGGGCTCGGTCATCAG-GTGGTCACTCTCGTCGGCCGGGGC 3364548 Query 83242 CGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACC 83296 |||||| |||| | ||| |||| || | || || || ||| || ||||| ||| Sbjct 3364547 GGGCAGGTGGGCCTTT---AGGTAGGCAAACACGGGGTGGGTGTCCT-GC-CCGTTCACC 3364493 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | |||||||| |||||| | ||||| ||||||||||| |||||| || |||| ||| Sbjct 3364492 TGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCCCCCCCAGGGCGCACGTACTTG 3364433 Query 83357 AGG 83359 ||| Sbjct 3364432 AGG 3364430 Score = 122 bits (134), Expect = 1e-22 Identities = 120/153 (78%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| || |||||||| || ||||| || ||||| ||||| | || | ||| Sbjct 3364051 CCTGGTGGCCAAACTGGTTGCAGGGGAAGCCCAGCACGACCAGGCGGCGGGGG--TAGCG 3363994 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||| ||| | ||| ||||| |||| || ||| |||||||||||||||| | Sbjct 3363993 GGC-CTGCAGCTGGTTGAGCTGGGTGTAATCCCTCACGGTGGTACCTCAGAGGGACGCCA 3363935 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||||||||||||| | ||||||||||| |||| Sbjct 3363934 CGTTCTCGATGAGGACCACCCGGCCCCGGAAGA 3363902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608768239820120