Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq220 156 4e-33 seq26 145 8e-30 seq307 129 6e-25 seq3752 89.7 5e-13 >seq220 Length=9331205 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| ||||| ||| Sbjct 1328893 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1328834 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | ||||| Sbjct 1328833 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1328775 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 1328774 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1328715 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 1328714 CATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1328667 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| | Sbjct 1328665 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 1328606 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| |||||||||||| | |||||| Sbjct 1328605 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1328546 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1328545 CAGGGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 1328486 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 1328485 ATCCAGAAGGAGTCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1328439 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| |||| ||||| || Sbjct 1329124 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 1329065 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | |||| | |||| || || | ||||| ||||| |||||| | || Sbjct 1329064 AGTGATACTATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGA 1329006 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 1329005 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 1328946 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| |||| || ||||| ||| |||| | || ||||| Sbjct 1328945 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGCGG 1328895 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || ||| | | Sbjct 1328437 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAACCAAGT 1328378 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| | |||||| Sbjct 1328377 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1328318 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1328317 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1328258 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 1328257 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 1328211 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || | || || || || || ||||| ||||||||| |||| ||||| ||| Sbjct 1327981 ATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1327922 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| | || | ||||| |||||||||||| | |||||| Sbjct 1327921 GACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1327862 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1327861 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1327802 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 1327801 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 1327754 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || | || || || || || ||||| ||||||||| |||| ||||| ||| Sbjct 1328209 ATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1328150 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| | || | ||||| |||||||||||| | |||||| Sbjct 1328149 GACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1328090 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1328089 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1328030 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 1328029 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 1327983 >seq26 Length=11430413 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || ||| Sbjct 3031759 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031700 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | || ||| Sbjct 3031699 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 3031640 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 3031639 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCAGACTACAAC 3031580 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| |||| |||| || ||| Sbjct 3031579 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGTGGC 3031532 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || ||| Sbjct 3031531 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031472 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | |||||| Sbjct 3031471 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 3031412 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| ||||||| | |||||||||| Sbjct 3031411 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3031352 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| |||| |||| || || Sbjct 3031351 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGGGG 3031305 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || || || |||||||| | || || || || Sbjct 3032218 AAAATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCC 3032159 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || ||||| || | ||| Sbjct 3032158 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGAC 3032099 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| |||| ||||||| | ||||||| Sbjct 3032098 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTAC 3032039 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| | ||| |||| |||| || ||| Sbjct 3032038 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 3031988 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 3031987 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTAGAGGTTGAGCCCAGT 3031928 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| |||||||| || | |||||| Sbjct 3031927 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 3031868 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||| | |||||||||| Sbjct 3031867 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 3031808 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| | ||| |||| |||| || ||| Sbjct 3031807 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 3031760 >seq307 Length=12913425 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 4483804 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 4483863 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | || |||||| Sbjct 4483864 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAAGAGGTG 4483917 >seq3752 Length=30765690 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | ||||||||||||||||| ||||||||||| || ||||| ||| Sbjct 11122266 GAGCCTCTTCTCAGAAAAAACCCCCGCCGGTTCGTCATTTTCCCCATCCAGTACCCAGAC 11122207 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||| ||| |||| |||| || || ||||| | || |||||| Sbjct 11122206 ATCTGGAAAATGTATAAACAGGCTCAGGCCTCCTTTTGGACAGCAGAAGAGGTG 11122153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 11116110 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 11116051 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || || |||||| ||| || || || ||| | Sbjct 11116050 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTCACTTTCTCCAATGAACTTATTAGCAGAG 11115991 Query 117162 ACGAGG 117167 | |||| Sbjct 11115990 ATGAGG 11115985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 116810 CGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 |||||| ||||||||||||| | | || ||||| || ||||| ||||||||||| | Sbjct 11119425 CGTTTCAGTCAGGAGGTGCAGATCCCAGAAGCGCGTTGTTTCTATGGCTTTCAGATTCTC 11119366 Query 116870 ATGGAGAACGTGCACTCGGAAATGTA 116895 || |||||||| |||||||| ||||| Sbjct 11119365 ATTGAGAACGTTCACTCGGAGATGTA 11119340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195029779280