Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq26 116 3e-21 seq220 104 2e-17 >seq26 Length=11430413 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || || || || |||||||| ||| || |||||| ||| Sbjct 3031775 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 3031834 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | |||||| ||||| || |||||||||||||| Sbjct 3031835 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTC 3031894 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| ||| || || ||| ||||| | ||| | || Sbjct 3031895 CTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGT 3031954 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || ||||| ||||||||| Sbjct 3031955 CTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 3031988 >seq220 Length=9331205 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 1328697 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCA 1328756 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||| || || || ||||| ||||| || || || || Sbjct 1328757 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1328816 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||||||||||| ||| | || ||||| ||||| || Sbjct 1328817 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1328876 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1328877 TTCACAAAGATCTGCAT 1328893 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || |||||| || || | Sbjct 1328914 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 1328973 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||| || || || || ||||||||||| | Sbjct 1328974 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGA 1329033 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | || || || ||||||||||| ||| | || |||| Sbjct 1329034 TCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1329093 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| || || ||||| ||||||||| Sbjct 1329094 CAGTCAGGGTCTTCACAAAGATCTGCATG 1329122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || | |||| ||| || | Sbjct 1327774 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCA 1327833 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||| || || || |||||||||||||| | Sbjct 1327834 GCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA 1327893 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | | || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 1327894 TCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1327953 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||| | |||||||| Sbjct 1327954 CAGTCAGGGTCTTCACACAGATCTGCAT 1327981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || | |||| ||| || | Sbjct 1328002 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCA 1328061 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||| || || || |||||||||||||| | Sbjct 1328062 GCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA 1328121 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | | || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 1328122 TCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1328181 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||| | |||||||| Sbjct 1328182 CAGTCAGGGTCTTCACACAGATCTGCAT 1328209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || | |||| ||| || | Sbjct 1328230 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCA 1328289 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||| || || || |||||||||||||| | Sbjct 1328290 GCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA 1328349 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | || | |||||| | || | || ||||||| ||| | || ||| Sbjct 1328350 TCTTGGCCTTCACATTCTCAATGGTGTCACTTGGT-TCCACCTCGAGGGTGATGGTCTTG 1328408 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 1328409 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || || |||||| || || ||||| || ||| Sbjct 1328469 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1328528 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || |||||||||||||| || || || Sbjct 1328529 GCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1328588 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || || ||| ||||| | ||| | || ||||| ||||| || Sbjct 1328589 ACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1328648 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1328649 TTCACAAAGATCTGCAT 1328665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810556733076