Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq153 107 4e-18 >seq153 Length=3080465 Score = 107 bits (118), Expect = 4e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | || | ||||| ||||| |||||||||| |||||||| Sbjct 76676 GCTTTTTTTGGAGCTCAGATGAACGCGTTTATTCATGTCATTATGTACATGTATTATGGA 76735 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||||||| || || ||||||||||| || | || || Sbjct 76736 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 76794 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 76795 ATTGCAATTGGTA 76807 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 76995 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 77054 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || ||||||| Sbjct 77055 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCTTGTTTGG 77114 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 77115 TAACTTCTACTATCGGACATATAAG 77139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923153490530120