Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq54 197 2e-45 >seq54 Length=5365974 Score = 197 bits (218), Expect = 2e-45 Identities = 204/266 (77%), Gaps = 31/266 (12%) Strand=Plus/Plus Query 139459 CGCGCGCGGCTCAACGGCTCCAACGGTCGTgcgcgcggggccgcgcgtgtgggagcgacg 139518 || |||| || || ||||| || || || || ||||| || |||| |||||| || Sbjct 1768982 CGGGCGCTGCCCACCGGCTGGAAGGG-CGAGCCGGCGGG----CGGGTGTCGGAGCGGCG 1769036 Query 139519 ccgtccgcgcgccccacggcgcaggggggcgcggg--ggttgccccgg-gggcgccgctc 139575 ||| || |||||||||||||| |||| ||||||| ||| | |||| ||||||||||| Sbjct 1769037 CCGGCCCCGCGCCCCACGGCGGAGGGAAGCGCGGGCGGGTCGGGCCGGTGGGCGCCGCTC 1769096 Query 139576 ccgtgttgctctgctggg----------ggcgcgg-------ggc------cgcgcgcCG 139612 |||| ||||||||||||| ||||||| ||| ||||| || Sbjct 1769097 CCGTTTTGCTCTGCTGGGATCCCCCCCGGGCGCGGAGGAGGAGGCGGGGAACGCGCCCCT 1769156 Query 139613 CATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGT 139672 | |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct 1769157 CTTCTCCCGGCCGCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGCAGTGGCGAGA 1769216 Query 139673 GCCGGCCGACCGCGGCCTGCGGGCGA 139698 ||||||||||||||||||| |||||| Sbjct 1769217 GCCGGCCGACCGCGGCCTGAGGGCGA 1769242 Score = 197 bits (218), Expect = 2e-45 Identities = 204/266 (77%), Gaps = 31/266 (12%) Strand=Plus/Minus Query 1922 TCGCCCGCAGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTG 1981 |||||| ||||||||||||||||||| | ||||| ||||||||||||||||||| ||||| Sbjct 1769242 TCGCCCTCAGGCCGCGGTCGGCCGGCTCTCGCCACTGCCGCCGCGAAGAGTTCGTCTCTG 1769183 Query 1982 TCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcg------gcc-------ccgcgcc-- 2026 ||||||||||||||| |||||||| | || ||||| ||| ||||||| Sbjct 1769182 TCAGCCTCGGCGGCGGCCGGGAGAAGAGGGGCGCGTTCCCCGCCTCCTCCTCCGCGCCCG 1769123 Query 2027 --------cccagcagagcaacacgggagcggcgccc-ccggggcaacc--cccgcgccc 2075 ||||||||||||| ||||||||||||||| |||| | ||| ||||||| Sbjct 1769122 GGGGGGATCCCAGCAGAGCAAAACGGGAGCGGCGCCCACCGGCCCGACCCGCCCGCGCTT 1769063 Query 2076 ccctgcgccgtggggcgcgcggacggcgtcgctcccacacgcgcggccccgcgcgcACGA 2135 |||| |||||||||||||| || ||||| |||||| |||| || ||||| || || Sbjct 1769062 CCCTCCGCCGTGGGGCGCGGGGCCGGCGCCGCTCCGACACCCG----CCCGCCGGCTCG- 1769008 Query 2136 CCGTTGGAGCCGTTGAGCCGCGCGCG 2161 || || ||||| || || |||| || Sbjct 1769007 CCCTTCCAGCCGGTGGGCAGCGCCCG 1768982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 139817 CCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAGCGGGCGG----AG 139871 ||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| | Sbjct 1769405 CCCCGGGGCTGCTCCCCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGGCGCGG 1769464 Query 139872 GGAGCGCGGCGAC 139884 ||||||||||||| Sbjct 1769465 GGAGCGCGGCGAC 1769477 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 5/73 (7%) Strand=Plus/Minus Query 1736 GTCGCCGCGCTCCCT----CCGCCCGCTGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGG 1790 |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1769477 GTCGCCGCGCTCCCCGCGCCCGCCCGCTGTTTTACTCGCTGACTTTCAGCGGGCGAGGGG 1769418 Query 1791 AGCCGCCCCAGGG 1803 ||| ||||| ||| Sbjct 1769417 AGCAGCCCCGGGG 1769405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569042103559920