Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq105 522 2e-143 seq87 98.7 7e-16 >seq105 Length=17183596 Score = 522 bits (578), Expect = 2e-143 Identities = 714/986 (72%), Gaps = 12/986 (1%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGC--CCAAAGGAAGTTCATACAGT 107685 ||||| ||||| || | ||||| | |||||||| || | | |||||| ||| Sbjct 3503282 TACCTGAACATGACAAAGGACTGCGGCAAGTTCAAGGCGACCCAGCG--GTTCATCGAGT 3503225 Query 107686 TCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 |||||||||| | |||||| ||| ||||||||||||||||| ||||| |||| || | Sbjct 3503224 TCCCACTGAGCCAGGAAGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACGACA 3503165 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 | ||||| | ||||| ||||| |||||| || | ||||||||||||||||| ||||||| Sbjct 3503164 AAATTGAGATGTTTGAGCGGCTCCTGCGATCCATCTATGCCCCTCAGAACATCTACTGTG 3503105 Query 107806 TCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 ||||||| || ||||| |||| ||||| || ||||| || |||||| | || Sbjct 3503104 TCCACGTTGACAGCAAGTCTCCAGCTGACTTCCAG-GAGGCCGTGCGGGCCATCGTAGCC 3503046 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 ||||||||||| ||||| ||||||| ||| ||||| ||||||||||||||| Sbjct 3503045 TGCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAAAGTGTGGTCTATGCCTCCTGGTCC 3502986 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAG 107984 | ||||| |||||||| ||||| ||| | ||| | | ||||| | |||| |||| Sbjct 3502985 CGGGTGCAGGCTGACCTCAACTGCATGCAGGACCTCTTGCAGAGGCCTGTGCAATGGCGC 3502926 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||| | || || || || || || || |||||||| ||||||||||| ||||| |||| Sbjct 3502925 TACATCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGAGATTGTCCAT 3502866 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaa 108104 ||||| |||||| | ||||| ||||||| |||||||| ||| || || | | |||| Sbjct 3502865 GCCCTGAAGATGCTAAAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTTCAAA 3502806 Query 108105 aaaaaTCGCTGGAAATACCGCTATGAGGT-GACAGACACACTGTACCCTACCAGCAAGAT 108163 | | |||||||| |||| ||| | || || | || | | || || || | Sbjct 3502805 CAGGAGCGCTGGAAGTACCATTATAAAGTGGAGAAGGTCA-TCTCCCGGACAGCCACGCA 3502747 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 ||| | || || || | | || |||||||||||||| ||||| || |||||| | | Sbjct 3502746 GAAAGCGCCACCACCCCACAGCTTTCCCATGTTCACAGGCAATGCGTACATTGTGGTCAC 3502687 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 || | ||||| || || |||| || ||||| | | | || || | |||| |||| Sbjct 3502686 GCGGGATTTTGTGCAGCACATCTTCGAGAACCCCACAGCACAGAGGTTCCTTGAGTGGGC 3502627 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGG 108341 ||| |||||||| ||||||||||| ||| ||||||||||||| | || ||| ||| | Sbjct 3502626 CAAGGACACCTACAGCCCCGACGAGCACATCTGGGCCACCCTCAACCGCATGC-CCG-GC 3502569 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||| || | ||| | ||||| ||| |||||||||||| ||| | ||| Sbjct 3502568 GTGCCGGGTGCCAGGCCTCAGAATGACAAGTTCCACCTCTCAGACATGAACGCCCTGGCC 3502509 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | || ||||||||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 3502508 CGCCTGGTCAAGTGGGAGTACCTGGAGGGTGACACCAGCAAAGGCGCGCCTTACCAGCCC 3502449 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| | || | || | | | || |||||||||||||||| || |||||| |||||| Sbjct 3502448 TGCACCGGCAAGCACCAGCGCTCCGTCTGCATTTACGGGGCGGGCGACCTGGCCTGGATG 3502389 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 |||||| | || ||||||||||| |||||||| || || | |||||| ||| || | | Sbjct 3502388 CTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGATCCTACGGTGGACGATGTCGCCATC 3502329 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCA 108607 |||||| | || ||| |||| || || Sbjct 3502328 CAGTGCCTCGAGGAGCACCTGCGGCA 3502303 Score = 517 bits (572), Expect = 8e-142 Identities = 777/1092 (71%), Gaps = 14/1092 (1%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || |||||| || ||||| || |||| | |||||| || | Sbjct 3513445 ATCAACTGCTCACGGATCATCCGTGGGGATGAGAAAGCCATCCAGGAGGCCCAGCTGAGC 3513386 Query 107583 AACCTGGAAGTGAAGAA--AAAGCGGTCGCCTCTCACTGGCACCT-ATTACCTCAACATA 107639 | |||||| ||| | | |||| | | ||| ||| || | | ||||| ||||| Sbjct 3513385 AGCCTGGAGGTGGTGCACCAAAGGGTTTCCCTGACAC---CAAGTGACTACCTGAACATG 3513329 Query 107640 ACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAA 107699 || | ||||| | ||||||||| || |||||| ||||||||||||| | Sbjct 3513328 ACAAAGGACTGCGGCAACTTCAAGGCGACCCGGCGGTTCATCGAGTTCCCACTGAGCCAG 3513269 Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 |||||| ||| ||||||||||||||||| ||||| |||| || || ||||| | ||| Sbjct 3513268 GAAGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACGACAAAATTGAGATGTTT 3513209 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || ||||| |||||| || | ||||||||||||||||| |||||||||||||| || Sbjct 3513208 GAGCGGCTCCTGCGATCCATCTATGCCCCTCAGAACATCTACTGTGTCCACGTTGACAGC 3513149 Query 107820 AAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGT 107878 ||||| |||| ||||| || ||||| || |||||| | ||||||||||||| || Sbjct 3513148 AAGTCTCCAGCTGACTTCCAG-GAGGCCGTGCGGGCCATCGTAGCCTGCTTCCCCAACGT 3513090 Query 107879 CTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938 ||| ||||||| ||| ||||| ||||||||||||||| | ||||| ||||| Sbjct 3513089 CTTTGTGGCCAGCCGCCTGGAAAGTGTGGTCTATGCCTCCTGGTCCCGGGTGCAGGCTGA 3513030 Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998 ||| ||||| ||| | ||| | | ||||| | |||| |||| ||| | || || || Sbjct 3513029 CCTCAACTGCATGCAGGACCTCTTGCAGAGGCCTGTGCAATGGCGCTACATCCTCAACAC 3512970 Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058 || || || || |||||||| ||||||||||| ||||| |||| ||||| ||| | | Sbjct 3512969 CTGTGGCACTGATTTCCCCATCAAGACCAATGCTGAGATTGTCCATGCCCTGAAGGTCCT 3512910 Query 108059 GAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAA 108118 || || ||||||| |||||||| ||| || || | | |||| | | |||||||| Sbjct 3512909 AAACGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTTCAAACAGGAGCGCTGGAA 3512850 Query 108119 ATACCGCTATGAGGT-GACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 |||| ||| | || || | || | | || || || | ||| | || || | Sbjct 3512849 GTACCATTATAAAGTGGAGAAGGTCA-TCTCCCGGACAGCCACGCAGAAAGCGCCACCAC 3512791 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 | | | || |||||||||||||| ||||| || |||||| | | || | ||||| | Sbjct 3512790 CCCACAGCTTTCCCATGTTCACAGGCAATGCGTACATTGTGGTCACGCGGGATTTTGTGC 3512731 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 | || |||| || ||||| | | | || || | |||| |||| ||| |||||||| | Sbjct 3512730 AGCACATCTTCGAGAACCCCACAGCACAGAGGTTCCTTGAGTGGGCCAAGGACACCTACA 3512671 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTCTGT 108355 |||||||||| ||| ||||||||||||| | || ||| ||| | |||| || | Sbjct 3512670 GCCCCGACGAGCACATCTGGGCCACCCTCAACCGCATGC-CCG-GCGTGCCGGGTGCCAG 3512613 Query 108356 TCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTG 108415 ||| | ||||| ||| |||||||||||| ||| | ||| | || |||||||| Sbjct 3512612 GCCTCAGAATGACAAGTTCCACCTCTCAGACATGAACGCCCTGGCCCGCCTGGTCAAGTG 3512553 Query 108416 GCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCA 108475 | |||||| ||||| || ||||| || |||||||| |||||| | || | || Sbjct 3512552 GGAGTACCTGGAGGGTGACACCAGCAAAGGCGCGCCTTACCAGCCCTGCACCGGCAAGCA 3512493 Query 108476 TCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCA 108535 | | | || |||||||||||||||| || |||||| |||||| |||||| | || || Sbjct 3512492 CCAGCGCTCCGTCTGCATTTACGGGGCGGGCGACCTGGCCTGGATGCTCCAGCAGCACCA 3512433 Query 108536 CCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGA 108595 ||||||||| |||||||| || || | |||||| ||| || | | |||||| | || || Sbjct 3512432 CCTCTTGGCCAACAAGTTCGATCCTACGGTGGACGATGTCGCCATCCAGTGCCTCGAGGA 3512373 Query 108596 GTACCTACGTCA 108607 | |||| || || Sbjct 3512372 GCACCTGCGGCA 3512361 >seq87 Length=2429215 Score = 98.7 bits (108), Expect = 7e-16 Identities = 241/359 (67%), Gaps = 5/359 (1%) Strand=Plus/Plus Query 108202 GGAA-TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACC-CTAA 108259 |||| ||||||||| || | | || ||||| || |||| ||||| | | | || Sbjct 268729 GGAAGTGCCTATTTCGTAGTTAGTAGAAGATTTGTAGAATATGTATTAGAAAGCAGCAAA 268788 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 || | ||| | |||| |||| ||||| || || ||||| || || |||| ||||| Sbjct 268789 ATACTTAAGT-TCATTGAGTGGGCGAAAGATACATACAGCCCAGATGAGTACCTGTGGGC 268847 Query 108320 CACCCTTCAGCGTGCTCCGTGGATGCCTGGCT-CTGTTCCTAGCCACCCCAAGTATCACA 108378 || ||||| | ||| || | || || | | ||| || ||||||| || Sbjct 268848 AACAATTCAGAGAA-TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGGCAAGTATGACG 268906 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 | || ||||||| ||| | |||||| | ||||||||||||||| || || || || Sbjct 268907 TTTCTGACATGAATGCAGTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTAT 268966 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 | || || || || |||| ||| |||| | ||| | | |||| ||| | Sbjct 268967 TGAAAGGTGCACCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTG 269026 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| || |||||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 269027 GGGCAGGAGACCTGAACTGGATCCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 269085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348252870293922