Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq230 87.8 4e-12 >seq230 Length=477728 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 248533 ATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACC 248592 ||| || ||| || ||| ||| | |||| ||| || || ||| || |||||||| Sbjct 356777 ATCACCATGAAGGTGATTCAGGGGCTGTACAGCGGTGTCACCACGGTGGAGCTGGACACT 356718 Query 248593 TTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCC 248652 | ||||||||||||||||| | || | | |||||||||||| | | ||||| Sbjct 356717 CTGGCTGCGGAGACGGCGGCCACCCTGACCACCAAGCACCCCGACTACGCCATCCTGGCG 356658 Query 248653 GGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAA 248690 | |||||||||||||| | || ||||||||||| || Sbjct 356657 GCCAGGATCGCCGTCTCCAACCTGCACAAAGAAACCAA 356620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073714767607104