Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq26 125 6e-24 seq220 114 1e-20 >seq26 Length=11430413 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | ||||||||||| ||| |||||||| |||||||||||| Sbjct 3031760 GCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3031819 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || |||| || ||| |||||||| || Sbjct 3031820 CAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGG 3031879 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | | || | ||| || Sbjct 3031880 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAAC 3031939 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || ||||| || ||||| |||||||||||||| |||||| Sbjct 3031940 CTCTAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 3031988 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | ||||||||||| ||| |||||||| |||||||||||| Sbjct 3031988 GCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3032047 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || || || || |||| || ||| |||||||| || Sbjct 3032048 CAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGG 3032107 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 3032108 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3032167 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||| || ||||| |||||||| ||||| ||||| || Sbjct 3032168 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| ||||||||| |||||||||||| || ||| |||| |||| Sbjct 3031324 CAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCA 3031383 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| |||||||| || | || ||||||||| | Sbjct 3031384 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGA 3031443 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| || || ||||| | Sbjct 3031444 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCC 3031503 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||| ||||| |||||| Sbjct 3031504 CTGTCAGGGTCTTCACGAAGATCTGCATG 3031532 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||||| ||| ||||||||| ||||||||||| Sbjct 3031532 GCCACCTCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 3031591 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || || || || |||| || ||| || || ||||| Sbjct 3031592 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 3031651 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 3031652 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3031711 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 3031712 CTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3031760 >seq220 Length=9331205 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| |||| Sbjct 1328458 CAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 1328517 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||||| ||| ||||| || || | |||||||||||| | Sbjct 1328518 GCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 1328577 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | || | ||| ||||| | ||| || ||||||| Sbjct 1328578 TCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGC 1328637 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| |||||||||||||| ||||| Sbjct 1328638 CAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| ||||||||||| ||| ||| | || |||| Sbjct 1328686 CAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 1328745 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| |||| || ||| ||||| || || | || ||||| ||| | Sbjct 1328746 GCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGA 1328805 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 1328806 TCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1328865 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | ||||| |||||||||||||| ||||| ||||| Sbjct 1328866 CAGTCAGGGTCTTCACAAAGATCTGCATACCGCCTC 1328901 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || | ||||| Sbjct 1328247 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1328306 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | |||||||||||| || || ||| || | Sbjct 1328307 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 1328366 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | |||||||| | ||| || |||||||| ||||| ||||||||| Sbjct 1328367 TCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1328426 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 1328427 AAGATCTGCAT 1328437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || | ||||| Sbjct 1327791 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1327850 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | |||||||||||| || | ||| || | Sbjct 1327851 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCACATTC 1327910 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 1327911 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1327970 Query 45326 AAGATTTGCAT 45336 |||| ||||| Sbjct 1327971 CAGATCTGCAT 1327981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || | ||||| Sbjct 1328019 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1328078 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | |||||||||||| || | ||| || | Sbjct 1328079 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCACATTC 1328138 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 1328139 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1328198 Query 45326 AAGATTTGCAT 45336 |||| ||||| Sbjct 1328199 CAGATCTGCAT 1328209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057129383813