Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04]
3,753 sequences; 1,229,094,286 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq220 82.4 6e-11
seq26 82.4 6e-11
>seq220
Length=9331205
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| || || ||||||||||| | || || | |||||||| ||
Sbjct 1328691 TGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 1328750
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || || |||| || || || || || ||| | |||||||||||| || |
Sbjct 1328751 TTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTG 1328810
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||||| ||||||| || | ||||||| | ||||| |||
Sbjct 1328811 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 1328870
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || || ||||| || |||||
Sbjct 1328871 AGGGTCTTCACAAAGATCTGCAT 1328893
>seq26
Length=11430413
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || ||||| || || ||||||||||||| || || | |||
Sbjct 3032004 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3032063
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | ||||||||| ||
Sbjct 3032064 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3032123
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| || | |||||| |
Sbjct 3032124 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3032183
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| || |||| || || || || || ||||||||
Sbjct 3032184 TTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379326648923985
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |