Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq230 138 1e-27 seq26 109 5e-19 seq220 98.7 9e-16 >seq230 Length=477728 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| ||||| || ||||| || || || || Sbjct 342974 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 343033 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| ||||| ||||| || || |||||||||||||| |||||| Sbjct 343034 CCCAAGTTCTGCTGGTTGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTG 343093 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||| || Sbjct 343094 CCGGTCTCCGTCTGCGACTCGATGATGGC 343122 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 345684 TTTCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTC 345743 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||||||||| || |||||||| || | || | ||| || || | |||| |||| Sbjct 345744 GCTGCTCCTCTTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCC 345803 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||| || || ||||||| Sbjct 345804 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 345839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || ||||| ||||||||||| || | ||||||||| ||||| || |||| || Sbjct 336433 CCCTCGTAGGTTTCGTACGGCCCCTGCTCTTTGGCAAGTTCACAGCTGGCTTCCAGAGCC 336492 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 |||||||| || |||||||| || | || |||||| ||| || ||| ||| | Sbjct 336493 CCGTAATAAATGGTCTCGAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGGCTCTCGAAG 336552 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 || |||||||| | ||| || || |||| ||||| || || || ||||| || ||| Sbjct 336553 GGGTAACGCATCAGGATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCGATGGGACGG 336612 Query 22877 T 22877 | Sbjct 336613 T 336613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 ||||| ||| || || || ||||| ||||||||||| ||||||||||| || || |||| Sbjct 347468 CCGGTACCTTGTTCCCTCCTTGATCCACGTAACGGGCAGTGTTGTTGTAGACCCTCAGCA 347527 Query 23547 TCGGCACGAGACCGTTGGA 23565 |||| ||||| |||||||| Sbjct 347528 TCGGAACGAGCCCGTTGGA 347546 >seq26 Length=11430413 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||||||| || || ||||| | || ||||| || Sbjct 3031532 CATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCCAG 3031473 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || |||||||| Sbjct 3031472 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCA 3031413 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || ||| || || Sbjct 3031412 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAA 3031353 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || || | ||||| || |||| Sbjct 3031352 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGGGGTA 3031303 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||||||| || || ||||| | || ||||| || Sbjct 3032218 AAAATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCC 3032159 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| | || ||||||||||||| | || |||||| Sbjct 3032158 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGAC 3032099 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| |||||||| || || ||| || Sbjct 3032098 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTAC 3032039 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || |||| || | ||||| || || Sbjct 3032038 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGG 3031989 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || ||||| || Sbjct 3031988 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTAGAGGTTGAGCCCAG 3031929 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 3031928 TGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 3031869 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 3031868 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 3031809 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || || |||| || | ||||| || || Sbjct 3031808 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGG 3031761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||||||| || ||||| | || ||||| || Sbjct 3031760 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCAG 3031701 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 3031700 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCA 3031641 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || | || || || Sbjct 3031640 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCAGACTACAA 3031581 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | ||||| || || Sbjct 3031580 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGTGG 3031533 >seq220 Length=9331205 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 1329124 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 1329065 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | | || | || || | || ||||||||| || | || || ||| Sbjct 1329064 AGTGATACTATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGAC 1329005 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||||||||| ||| |||||||| || || || || Sbjct 1329004 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 1328945 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || ||||| || || | || || ||||||| Sbjct 1328944 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGCGGTA 1328893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745487983760