Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3752 129 7e-25 seq307 111 2e-19 seq230 87.8 2e-12 >seq3752 Length=30765690 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || |||||||| ||||| ||||| | ||| | Sbjct 11115985 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCT 11116044 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 11116045 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11116104 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 11116105 CAACCACTCTCTCACC 11116120 >seq307 Length=12913425 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | |||||||||||| |||||||| ||||||| || | || | Sbjct 4487512 CCTCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4487453 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| || || ||||| | Sbjct 4487452 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAG 4487393 Query 33724 C 33724 | Sbjct 4487392 C 4487392 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | ||||||||||| || || || || || ||||| || || ||| Sbjct 4488796 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4488737 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 4488736 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4488702 >seq230 Length=477728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||||||||||||||| || || | || || || || | || || Sbjct 345689 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGC 345748 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || || ||||| || || || || ||| | | || || | |||||||| Sbjct 345749 TCCTCTTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGC 345808 Query 63387 TCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 345809 TCCAGGTAGATGGCAAAAGCCCCAGG 345834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788053681840