Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3752 123 3e-23 seq3749 120 4e-22 seq307 111 2e-19 seq230 87.8 2e-12 >seq3752 Length=30765690 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || |||||||| ||||| ||||| | ||| | Sbjct 11115985 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCT 11116044 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 11116045 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11116104 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 11116105 CAACCACTCTCTCACC 11116120 >seq3749 Length=51414391 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||||||||||||||| ||| Sbjct 22207449 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 22207390 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 22207389 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 22207330 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || ||||| || ||||| ||||| ||||| | |||||| ||| ||||| | |||| | Sbjct 22207329 TGAGTGTCGTAAATAATAAATCCACAGAACAGAAGGGCTCCAGCAGCAGCAAACACCAAC 22207270 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 22207269 TCTATTGTCTCACT 22207256 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 9481 CTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGAA 9540 ||||||||| ||| ||||| ||||||||||| || | |||||||| || || |||||| Sbjct 22206167 CTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCGGTGAGTCCAAGAA 22206108 Query 9541 ACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGA 9591 | || |||||||| || || || ||||||| |||| ||||||||||| Sbjct 22206107 ATACAGCAGTAGTAAGGATAAAGGCTTGCAAGACGATGGACACATCATAGA 22206057 >seq307 Length=12913425 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 4487512 CCTCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4487453 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4487452 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAG 4487393 Query 36300 C 36300 | Sbjct 4487392 C 4487392 >seq230 Length=477728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | || |||| || || Sbjct 345689 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGC 345748 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || || || || ||| | | || || | |||||||| Sbjct 345749 TCCTCTTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGC 345808 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 345809 TCCAGGTAGATGGCAAAAGCCCCAGG 345834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658141923468520