Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq153 168 2e-36 seq26 136 9e-27 seq307 120 7e-22 seq3752 113 1e-19 seq115 86.0 1e-11 >seq153 Length=3080465 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 74279 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 74338 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 74339 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 74398 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 74399 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 74441 >seq26 Length=11430413 Score = 136 bits (150), Expect = 9e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || ||||| ||||| || || ||||| Sbjct 3031986 ATGCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3032045 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || || || |||||||| || |||||||| || || || Sbjct 3032046 GACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGT 3032105 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 3032106 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 3032165 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || ||||||||||| Sbjct 3032166 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 >seq307 Length=12913425 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 4487377 GGAGAACGTGTAGTAGCTTTTGCAGCGGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 4487436 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 4487437 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 4487496 Query 269246 ATAAGCAGGGACGA 269259 || ||||| ||||| Sbjct 4487497 ATCAGCAGAGACGA 4487510 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| |||| || ||||| || | ||||| | ||||| || || | Sbjct 4485167 TCTAGGTGGAGCGGTTCAGTCAGGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 4485226 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 4485227 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTGCTTATTGACACCTACA 4485286 Query 269016 T 269016 | Sbjct 4485287 T 4485287 >seq3752 Length=30765690 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 11116108 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 11116049 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 11116048 CTGAAGAAGAGGGGCCTGATGCCTGGACTCACTTTCTCCAATGAACTTATTAGCAGAGAT 11115989 Query 269258 GA 269259 || Sbjct 11115988 GA 11115987 >seq115 Length=9002086 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 238599 TCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGG 238658 ||| || || | |||||||| | |||||| |||||| | ||| | || ||||| ||| Sbjct 5188012 TCCCCCTAGCTCCAAATGGTCCGGGAAGGCAAGATGCATGGCTTCCTGCGGATGTACTGG 5187953 Query 238659 GCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTAT 238718 || || ||||| || || ||||| | ||||| |||| || || | | || || Sbjct 5187952 GCCAAGAAGATCCTGGAGTGGACCCGCTCTCCCGAGGAGGCCCTCCAGTTTGCCATCTAC 5187893 Query 238719 CTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 || ||||| ||||| || ||||| | ||| || |||||||||||||| Sbjct 5187892 CTCAACGACCGCTACGAGCTGGACGGGAGGGACCCCAACGGATACGTAGG 5187843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151343034648124