Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq19 150 3e-31 seq89 113 6e-20 >seq19 Length=5382850 Score = 150 bits (166), Expect = 3e-31 Identities = 212/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 2218286 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2218345 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 2218346 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 2218405 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 2218406 AGCAGATAGCATTTCCCATCAGTCCTTTCAGCGAGAACGGTGCTCCAATCTCCACCATCG 2218465 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| |||| | || | ||||| ||||| Sbjct 2218466 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACCAGAAGGCCTGGGTACAGCTCCA 2218525 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || |||||||| ||||| | || || || || ||||| ||||||||||| Sbjct 2218526 TGGCATCAATGTCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTGT 2218583 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||||||||| ||||| || || ||| ||| |||||||| || ||||||| Sbjct 2220604 ATGAGTCTAGTGGTCTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 2220663 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || || || |||||||| | || || Sbjct 2220664 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCATACATCATCAAGCCTGGG 2220723 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 2220724 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2220783 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 2220784 TAGATCATTTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2220843 Query 9862 TG 9863 || Sbjct 2220844 TG 2220845 >seq89 Length=7060200 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || || ||||||||||| |||||||||||||| | |||| Sbjct 5100505 TCTTAACGATCTCAAAGCCAGTCTCCCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 5100446 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||| | ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 5100445 AGCAGACGGGGTTTCCAAAAAGCCCCTTCAGGGAAAAGGGAGCTCCAATCTCCACCATGC 5100386 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| | || || || | || || || | || ||||||| Sbjct 5100385 TTTCCCCAAAAATACCATTGGGTTGAGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 5100326 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 5100325 GAGCATCAATGTCTCCATACAG 5100304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708491561330320