Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq115 87.8 2e-12 >seq115 Length=9002086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 || || || || || || | ||| || |||||||||||||| ||||| || |||||||| Sbjct 5182901 GAAGGCAAGATGCATGGCTTCCTGCGGATGTACTGGGCCAAGAAGATCCTGGAGTGGACC 5182842 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | |||||||| |||| ||| ||| | | || || || ||||| | ||| || ||| Sbjct 5182841 CGCTCTCCCGAGGAGGCCCTCCAGTTTGCCATCTACCTCAACGACCGCTACGAGCTGGAC 5182782 Query 71837 GGTCGCGATCCTAACGGTTATGTCGG 71862 || | || || ||||| ||||| || Sbjct 5182781 GGGAGGGACCCCAACGGATATGTAGG 5182756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 || || || || || || | ||| || |||||||||||||| ||||| || |||||||| Sbjct 5187988 GAAGGCAAGATGCATGGCTTCCTGCGGATGTACTGGGCCAAGAAGATCCTGGAGTGGACC 5187929 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | |||||||| |||| ||| ||| | | || || || ||||| | ||| || ||| Sbjct 5187928 CGCTCTCCCGAGGAGGCCCTCCAGTTTGCCATCTACCTCAACGACCGCTACGAGCTGGAC 5187869 Query 71837 GGTCGCGATCCTAACGGTTATGTCGG 71862 || | || || ||||| || || || Sbjct 5187868 GGGAGGGACCCCAACGGATACGTAGG 5187843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478639944750160