Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq220 102 5e-17 >seq220 Length=9331205 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| |||| ||| | ||| |||||| |||||| || || ||||| |||| Sbjct 1328437 TACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1328496 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | || || || ||||| || | | || || || | || Sbjct 1328497 ACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGG 1328556 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || || ||||||||||| | |||||| | |||| Sbjct 1328557 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAA 1328616 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| ||||| || |||||||| Sbjct 1328617 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||||| ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 1328893 TACCGCCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1328952 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | || || || || || || || | || || || | || Sbjct 1328953 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGG 1329012 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | |||||| | || | Sbjct 1329013 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGA 1329072 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 1329073 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1329124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931879619743