Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq26 86.0 5e-12 >seq26 Length=11430413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || || ||||| || || || ||| Sbjct 3032019 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCA 3032078 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 3032079 GCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 3032138 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| || | || || || ||||| || Sbjct 3032139 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTC 3032198 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3032199 TTCACGAAGATCTGCAT 3032215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || ||||| || || || ||| Sbjct 3031335 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCA 3031394 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 3031395 GCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 3031454 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| || | || || || ||||| || Sbjct 3031455 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTC 3031514 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 3031515 TTCACGAAGATCTGCATG 3031532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420115183183836