Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq230 118 2e-21 seq3752 96.9 7e-15 seq307 89.7 1e-12 >seq230 Length=477728 Score = 118 bits (130), Expect = 2e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC-TGGGCCAGCTT 244380 || ||||| || ||| ||||||||||| ||| || || | || | | ||| || | Sbjct 336415 CCTTTGCTCACAGGGGAACCCTCGTAGGTTTCGTACGGCCCCT-GCTCTTTGGCAAGTTC 336473 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 |||||| | || || || |||| || ||||||||||| ||| || ||||| | ||| Sbjct 336474 ACAGCTGGCTTCCAGAGCCCCGTAATAAATGGTCTCGAAAATCTGCTGGTTCAAG-CGCT 336532 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| | || ||||||| | ||||| |||||| | || ||||| ||||||| Sbjct 336533 GGGCCTCGGGGCTCTCGAAGGGGTAACGCATCAGGATGAAGGCATCTGCCAGGCCCTGCA 336592 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 | |||||||||||||| | ||| || ||||||||||| Sbjct 336593 CCCCGATGCCGATGGGACGGTGGCGTCTGTTGGAGCGC 336630 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| |||||||||||||| | |||||| || Sbjct 345694 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGCTCCTC 345753 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | || || | ||| ||||||| ||| | |||||| ||||||| Sbjct 345754 TTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 345813 Query 245128 GTAGA 245132 ||||| Sbjct 345814 GTAGA 345818 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | ||||||||| || || || || || ||||| ||||| |||||||| Sbjct 342974 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 343033 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 |||| || ||| || ||| ||| |||||||| ||| |||||||||||| ||||| Sbjct 343034 CCCAAGTTCTGCTGGTTGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTG 343093 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 |||||||| ||| | ||| || | || |||||| | | ||||| ||| |||| Sbjct 343094 CCGGTCTCCGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTG 343153 Query 244886 CG 244887 || Sbjct 343154 CG 343155 >seq3752 Length=30765690 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 11116120 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 11116061 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| |||||||| ||||| || ||||| Sbjct 11116060 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTCACTTTCTCCAATGAACTT 11116001 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 11116000 ATTAGCAGAGATGAGG 11115985 >seq307 Length=12913425 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 4487389 GTAGCTTTTGCAGCGGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 4487448 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || ||||||||||||||||| ||| Sbjct 4487449 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGCAGAGAC 4487508 Query 42828 GAGG 42831 |||| Sbjct 4487509 GAGG 4487512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944294898687280