Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq220 93.3 3e-14 >seq220 Length=9331205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || |||||||| ||||| || ||| |||||||| |||||||| || | Sbjct 1328894 ACCGCCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 1328953 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| |||| |||| |||||||| || || ||||| | |||||| || || Sbjct 1328954 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGG 1329013 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCAC-ACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||| | | |||| | ||||| | | ||| Sbjct 1329014 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTT-CTCAATAGTATCACTGGGCTCGA 1329072 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133 |||| || || || || || || || || ||||||||||| ||||| || || Sbjct 1329073 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 1329127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397044238489906