Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq220 132 1e-25 >seq220 Length=9331205 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || ||||| |||||| Sbjct 1328910 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1328969 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | || || || ||||||||||| | ||| || ||| ||||| || || || Sbjct 1328970 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---GTCTGGGGGGATACCCTCCTTG 1329026 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || |||| ||| || | || || ||||| ||||| Sbjct 1329027 TCCTGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATG 1329086 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || |||||||| Sbjct 1329087 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1329121 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || ||||| || ||| Sbjct 1328682 AGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1328741 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| || | ||||| ||||| |||||| Sbjct 1328742 TCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1328801 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || |||||||| || || | || || | || || ||||| ||||| ||| Sbjct 1328802 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1328861 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||| Sbjct 1328862 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328893 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || | ||| || ||| Sbjct 1328226 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328285 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | || || | ||||||||||| | ||| || ||| ||||| || || || Sbjct 1328286 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTG---GTCTGGGGGGATGCCCTCCTTG 1328342 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || ||||| || || || | || || | ||| || ||||| ||||| Sbjct 1328343 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATG 1328402 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || |||||||| Sbjct 1328403 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || | ||| || ||| Sbjct 1327770 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1327829 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | || || | ||||||||||| | ||| || ||| ||||| || || || Sbjct 1327830 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTG---GTCTGGGGGGATGCCCTCCTTG 1327886 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| | || ||||| || || || | || || | || || ||||| ||||| Sbjct 1327887 TCCTGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1327946 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || | |||||||| Sbjct 1327947 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1327981 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || | ||| || ||| Sbjct 1327998 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328057 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | || || | ||||||||||| | ||| || ||| ||||| || || || Sbjct 1328058 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTG---GTCTGGGGGGATGCCCTCCTTG 1328114 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| | || ||||| || || || | || || | || || ||||| ||||| Sbjct 1328115 TCCTGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1328174 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || | |||||||| Sbjct 1328175 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1328209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179597675949534