Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq26 143 3e-29 seq220 118 1e-21 >seq26 Length=11430413 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| |||| || ||||||| ||||| Sbjct 3031548 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCT 3031607 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || |||||||| ||||| || || Sbjct 3031608 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 3031667 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | ||| | |||| Sbjct 3031668 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031727 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 3031728 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| ||||||| ||||||||||| Sbjct 3032019 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCA 3032078 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| ||||| ||||| || || || || || ||| Sbjct 3032079 GCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 3032138 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | ||| | |||||| || |||| || Sbjct 3032139 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTC 3032198 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 3032199 TTCACGAAGATCTGCATTTT 3032218 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | ||||||| ||||| Sbjct 3031320 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3031379 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||||||||| ||||| ||||| || || Sbjct 3031380 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3031439 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | ||| | |||| Sbjct 3031440 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031499 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || ||||| || ||||| Sbjct 3031500 TTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| | ||||| ||||||||||| Sbjct 3031791 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCA 3031850 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| ||||| || || || || || || || ||| Sbjct 3031851 GCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3031910 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| || || || |||| || | |||||| || |||| || Sbjct 3031911 ACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTCCCTGTCAGGGTC 3031970 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 3031971 TTCACAAAGATCTGCAT 3031987 >seq220 Length=9331205 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 1328910 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1328969 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| ||||||||| || || || || || || || Sbjct 1328970 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 1329029 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||||| || || || || | || | |||| Sbjct 1329030 TGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTC 1329089 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 1329090 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1329124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621360413320